Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02968 ATGCAGAGGCCTCCACCGGAAGATTTTCTGTTGAAGGAGACCAAGCCCCACCTCGGTGGGGGAAAGGTCTCCGGTGACAAGCTTACCAGCACATATGACCTTGTTGAGCAAATGCAGTACCTGTACGTGAGGGTTGTGAAGGCTAAGGACTTACCTGCAAAGGATGTCACCGGCAGTTGTGACCCTTATACTGAAGTGAAGTTGGGGAACTACAAAGGCACCACGCGGCACTTCGAGAAGAAGAGTAATCCCGAATGGAACCAGGTTTTTGCTTTCTCGAAAGACCGCATTCAGGCTTCCATTCTGGAGGTCACTGTGAAGGATAAGGATGTTGTGAGGGATGATTTCATCGGTCGGGTGTTGTTCGACCTGAATGAGGTCCCAAAGCGTGTTCCACCGGATAGTCCTCTTGCACCACAGTGGTATAGATTGGAGGATAGGAAGGGTGATAAGGCGAAGGGGGAGCTAATGCTGGCTGTTTGGATGGGCACACAGGCTGATGAAGCATTTCCCGAAGCATGGCACTCAGATGCTGCGACGGTTACTGGGACTGATGCTCTTGCAAACATTAGATCAAAGGTGTATCTGTCTCCTAAGCTTTGGTATTTGAGGGTTAATGTGATAGAGGCGCAAGACTTGCAGCCGAGTGACAAGGGTAGGTACCCTGAAGTTTTTGTTAAGGCTTCTCTGGGAAATCAGACCTTGAGGACTAGAATCTCTCAAAGCAGGACTATCAATCCAATGTGGAATGAGGATATGATGTTTGTGGCTGCCGAACCATTCGAGGAGCCTCTGATTTTGAGTGTGGAGGACAGAGTTGCCCCTAACAAGGAGGAATCACTTGGGAGGTGTGCTATTTCTTTACAAATGGTGGAGCGGAGACTGGATTACAAACCTGTGAATACCAAGTGGTATAACATTGAAAAACACGTTGTTATAATGGAAGGAGAAAAGAAGAAGGAAATCAAGTTTTCAAGCAAGATTCATACGAGGATCTGTCTGGAAGGTGGTTATCATGTTTTGGATGAATCAACTCACTACAGCAGTGATCTTCGCCCAACTGCTAAACAGCTGTGGAAGTCCAGTATTGGAGTTCTTGAATTGGGGATATTGAATGCACAGGGTTTGATGCCAATGAAAACAAAAGATGGTAAGGGAACAACAGATGCCTATTGTGTAGCAAAATATGGGCAGAAGTGGGTGAGGACAAGGACAATCATTGATAGCTTCGCACCCCGGTGGAATGAGCAATATACTTGGGAGGTTTTTGATCCTTGCACTGTCATTACAATTGGTGTCTTTGATAACTGTCATTTGCATGGTGGTGATAAGGGTGGAGGAGCAAAAGATTCCAAAATTGGGAAGGTAAGAATCCGTCTTTCCACCCTTGAGACTGACCGTGTCTATACACATTCGTATCCTCTTCTAGTTCTTCATCCAAATGGGGTGAAGAAAATGGGTGAAATCCACTTGGCTGTAAGGTTTACTTGTTCTTCTTTGCTTAATATGATGCACATGTATTCACTGCCTTTGTTGCCTAAGATGCATTATATTCACCCACTAACTGTTAGCCAGCTTGACAATTTGAGGCATCAAGCTACTCAGATTGTTTCAATGAGACTGAGTCGTGCCGAGCCACCCTTGAGAAAGGAGATAGTGGAATATATGCTGGATGTGGGTTCCCACATGTGGAGCATGAGAAGAAGCAAGGCCAACTTTTTCAGGATCATGGGAGTTTTAAGTGGACTAATAGCGGTAGGAAAATGGTTTGACCAAATCTGCAATTGGAAAAATCCAATCACAACAATTCTGATCCATATCCTGTTCATAATATTGGTCATGTACCCTGAGCTTATCTTACCTACAATATTCCTATACCTCTTCTTGATTGGAGTTTGGTACTATAGATGGAGGCCAAGACACCCTCCTCACATGGACACTCGTCTCTCTCATGCAGATTCTGCTCACCCAGATGAACTTGATGAAGAGTTTGACACATTCCCAACCACCAGACCTTCGGACATCGTGAGGATGAGATATGATAGGCTTAGAAGCATTGCTGGGAGGATACAGACAGTGGTTGGTGATTTGGCCACACAAGGGGAGAGGCTGCAGTCTTTGCTCAGCTGGAGGGACCCAAGAGCTACTGCACTCTTTGTCATCTTCTGTCTGGTTGCTGCCATTGTACTCTATGTTACTCCATTCCAGGTTGTGGCACTTCTCACTGGAATCTATGTATTGAGACACCCCAGGTTCCGCCACAAGCTTCCTTCAGTGCCTCTCAATTTCTTCAGAAGGCTGCCTGCAAGAACTGATTGCATGCTTTGA 2328 0.4579 MQRPPPEDFLLKETKPHLGGGKVSGDKLTSTYDLVEQMQYLYVRVVKAKDLPAKDVTGSCDPYTEVKLGNYKGTTRHFEKKSNPEWNQVFAFSKDRIQASILEVTVKDKDVVRDDFIGRVLFDLNEVPKRVPPDSPLAPQWYRLEDRKGDKAKGELMLAVWMGTQADEAFPEAWHSDAATVTGTDALANIRSKVYLSPKLWYLRVNVIEAQDLQPSDKGRYPEVFVKASLGNQTLRTRISQSRTINPMWNEDMMFVAAEPFEEPLILSVEDRVAPNKEESLGRCAISLQMVERRLDYKPVNTKWYNIEKHVVIMEGEKKKEIKFSSKIHTRICLEGGYHVLDESTHYSSDLRPTAKQLWKSSIGVLELGILNAQGLMPMKTKDGKGTTDAYCVAKYGQKWVRTRTIIDSFAPRWNEQYTWEVFDPCTVITIGVFDNCHLHGGDKGGGAKDSKIGKVRIRLSTLETDRVYTHSYPLLVLHPNGVKKMGEIHLAVRFTCSSLLNMMHMYSLPLLPKMHYIHPLTVSQLDNLRHQATQIVSMRLSRAEPPLRKEIVEYMLDVGSHMWSMRRSKANFFRIMGVLSGLIAVGKWFDQICNWKNPITTILIHILFIILVMYPELILPTIFLYLFLIGVWYYRWRPRHPPHMDTRLSHADSAHPDELDEEFDTFPTTRPSDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATALFVIFCLVAAIVLYVTPFQVVALLTGIYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 775
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02968 775 Gene3D C2 domain 188 332 IPR035892 -
Vimu6g02968 775 ProSiteProfiles C2 domain profile. 22 142 IPR000008 -
Vimu6g02968 775 FunFam C2 domain-containing protein 188 334 - -
Vimu6g02968 775 MobiDBLite consensus disorder prediction 1 15 - -
Vimu6g02968 775 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 40 178 IPR035892 -
Vimu6g02968 775 Gene3D C2 domain 39 161 IPR035892 -
Vimu6g02968 775 CDD C2D_MCTP_PRT_plant 365 492 IPR047255 -
Vimu6g02968 775 ProSiteProfiles C2 domain profile. 181 305 IPR000008 -
Vimu6g02968 775 SMART C2_3c 40 136 IPR000008 -
Vimu6g02968 775 SMART C2_3c 202 300 IPR000008 -
Vimu6g02968 775 SMART C2_3c 365 472 IPR000008 -
Vimu6g02968 775 FunFam C2 domain-containing protein 35 179 - -
Vimu6g02968 775 Pfam C2 domain 365 475 IPR000008 -
Vimu6g02968 775 Pfam C2 domain 201 307 IPR000008 -
Vimu6g02968 775 Pfam C2 domain 40 142 IPR000008 -
Vimu6g02968 775 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 355 IPR035892 -
Vimu6g02968 775 PANTHER PHOSPHORIBOSYLANTHRANILATE TRANSFERASE ISOFORM 1 6 775 IPR047259 -
Vimu6g02968 775 Pfam Plant phosphoribosyltransferase C-terminal 620 775 IPR013583 -
Vimu6g02968 775 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 364 505 IPR035892 -
Vimu6g02968 775 FunFam C2 domain-containing protein 347 499 - -
Vimu6g02968 775 Gene3D C2 domain 340 496 IPR035892 -
Vimu6g02968 775 ProSiteProfiles C2 domain profile. 347 473 IPR000008 -
Vimu6g02968 775 MobiDBLite consensus disorder prediction 1 23 - -
Vimu6g02968 775 CDD C2B_MCTP_PRT_plant 40 164 IPR047257 -
Vimu6g02968 775 CDD C2C_MCTP_PRT_plant 202 353 IPR047258 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02968 Vimu-Chr6 26190850 26195448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02968 1 775 Lipid Metabolism Gene Families AT3G57880 90.323 0.0 1486
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02968 - - gmx:100818371 1524.22
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02968 6 26190850 26195448 Vimu4g01476 4 15440934 15443597 ECH
Vimu6g02968 6 26190850 26195448 Vimu6g02968 6 26190850 26195448 ECH
Vimu6g02968 6 26190850 26195448 Vimu3g00341 3 3253206 3255530 PCT