Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g00341 ATGCAGAGGCCTCCACCTGAAGATTTTCTGTTGAAGGAGACCAAACCCCACCTTGGAGGGGGAAAGGTCTCTGGTGATAAACTTACCAGTACCTATGATCTGGTTGAGCAAATGCAGTACCTTTATGTGAGGGTTGTGAAGGCCAAGGACTTGCCTGCCAAAGATGTCACTGGGAGTTGTGATCCTTATGCTGAAGTCAAGCTTGGGAACTACAAGGGTACTACCAGGCATTTCGAGAAGAAAACCAATCCTGAGTGGAACCAGGTTTTTGCCTTCTCGAAGGACCGGCTTCAAGCGTCTGTGCTGGAGGTTACCGTGAAGGATAAGGATGTTGTGAAGGATGACTTCATCGGACGTGTCTGGTTTGACCTGAATGAGGTCCCCAAAAGGGTGCCTCCAGATAGTCCTTTGGCGCCCCAATGGTATAGATTAGAAGATAGAAAGGGTGACAAGGTGAAGGGAGAGCTGATGTTGGCTGTTTGGATGGGTACCCAGGCTGATGAAGCTTTTCCCGAAGCTTGGCACTCGGATGCTGCTACGGTTGGTGGAAGTGATGCTCTTGCCAACATTAGATCGAAAGTGTATCTGTCTCCTAAGCTTTGGTATTTGAGGGTTAATGTGATTGAGGCACAGGACTTACAGCCAACTGATAAGGGTAGGTACCCTGAGGTTTTCGTGAAGGCTATTCTGGGGAATCAGGCCTTGAGGACCAGAATCTCTCATAGTAGGAGTATTAATCCAATGTGGAATGAGGATTTGATGTTTGTGGCAGCCGAACAGTTTGAGGAACCGCTGATATTGAGTGTGGAGGATAGAGTTGCCCCTAACAAGGATGAAGTGTTGGGGAGGTGTGCTATTCCTCTGCAGTATGTGGAAAAGAGACTAGACCACAAACCAGTGAATACAAGGTGGTTCAATCTGGAAAGGCATATTGTTGTTGAGGGGGAGAAGAAGAAGGATACCAAATTTTCAAGCAGGATTCACATGAGGGTTTGTCTAGAAGGTGGCTATCATGTTTTAGACGAATCTACTCACTACAGCAGTGATCTTCGCCCAACAGCGAAACAGCTGTGGAAGTCTGGCATTGGTGTTCTTGAACTGGGGATATTGAATGCTCATGGTTTGATGCCGATGAAAACGAAGGATGGGAGAGGGACAACAGATGCTTATTGTGTAGCGAAATATGGGCAGAAGTGGGTCAGGACAAGGACAATAATTGACAGCTTTGCTCCAAGATGGAATGAGCAATATACTTGGGAGGTTTTTGATCCTTGCACTGTCATTACAATTGGTGTGTTTGATAACTGTCATCTGCATGGTGGAGACAAGGCTGGTGGAACAAAAGATTCAAAGATTGGAAAGGTGAGGATTCGTCTTTCCACCCTTGAGACTGATCGGGTCTATACACATTCCTATCCACTTCTTGTTCTTCACCCAAACGGGGTGAAGAAGATGGGTGAGATTCACTTGGCTGTGAGGTTCACTTGTTCATCTCTGCTCAATATGATGCACATGTATTCACAACCCTTGTTGCCAAAAATGCACTACATACACCCGCTGACTGTCAGCCAGCTCGACAGTCTGAGGCATCAAGCTACTCAGATTGTTTCAATGAGACTGAGTCGTGCCGAGCCACCGCTGAGAAAAGAAGTAGTGGAATATATGCTGGACGTGGGTTCCCACATGTGGAGTATGAGAAGAAGCAAAGCCAACTTCTTCAGGATTATGGGGGTTTTGGGTGGTCTAATTGCTGTAGGAAAATGGTTTGATCAGATTTGCAATTGGAGAAGTCCAGTCACTACAATTCTGATCCATATCTTGTTCATAATACTAGTTATGTATCCAGAGCTTATCTTGCCTACAATTTTCCTTTACCTCTTCCTGATTGGAATCTGGTACTACAGATGGAGGCCAAGGCAACCTCCTCACATGGACACTCGTCTCTCTCATGCAGACTCGGCACATCCAGATGAACTTGATGAAGAGTTTGACACATTCCCTACCTCCCGGCCAAATGACATTGTGAGGATGCGATATGATCGACTTAGAAGCATTGCTGGGAGGATTCAAACTGTGGTTGGGGACTTGGCCACTCAGGGTGAAAGGCTGCAATCTTTGCTAAGCTGGCGTGATCCCAGAGCTACATCACTGTTTGTGCTTTTCTGTCTGGTTGCTGCTGTTGTTATGTACGTCACTCCGTTCCAAGTTGTGGCCCTCTTGACAGGAATTTATGTGTTGAGACATCCAAGGTTTCGCCATAAGCTTCCGTCGGTGCCTCTTAATTTCTTCAGGAGGCTGCCTGCAAGAACTGATTGCATGCTCTGA 2325 0.4654 MQRPPPEDFLLKETKPHLGGGKVSGDKLTSTYDLVEQMQYLYVRVVKAKDLPAKDVTGSCDPYAEVKLGNYKGTTRHFEKKTNPEWNQVFAFSKDRLQASVLEVTVKDKDVVKDDFIGRVWFDLNEVPKRVPPDSPLAPQWYRLEDRKGDKVKGELMLAVWMGTQADEAFPEAWHSDAATVGGSDALANIRSKVYLSPKLWYLRVNVIEAQDLQPTDKGRYPEVFVKAILGNQALRTRISHSRSINPMWNEDLMFVAAEQFEEPLILSVEDRVAPNKDEVLGRCAIPLQYVEKRLDHKPVNTRWFNLERHIVVEGEKKKDTKFSSRIHMRVCLEGGYHVLDESTHYSSDLRPTAKQLWKSGIGVLELGILNAHGLMPMKTKDGRGTTDAYCVAKYGQKWVRTRTIIDSFAPRWNEQYTWEVFDPCTVITIGVFDNCHLHGGDKAGGTKDSKIGKVRIRLSTLETDRVYTHSYPLLVLHPNGVKKMGEIHLAVRFTCSSLLNMMHMYSQPLLPKMHYIHPLTVSQLDSLRHQATQIVSMRLSRAEPPLRKEVVEYMLDVGSHMWSMRRSKANFFRIMGVLGGLIAVGKWFDQICNWRSPVTTILIHILFIILVMYPELILPTIFLYLFLIGIWYYRWRPRQPPHMDTRLSHADSAHPDELDEEFDTFPTSRPNDIVRMRYDRLRSIAGRIQTVVGDLATQGERLQSLLSWRDPRATSLFVLFCLVAAVVMYVTPFQVVALLTGIYVLRHPRFRHKLPSVPLNFFRRLPARTDCML 774
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g00341 774 Gene3D C2 domain 339 495 IPR035892 -
Vimu3g00341 774 ProSiteProfiles C2 domain profile. 346 472 IPR000008 -
Vimu3g00341 774 MobiDBLite consensus disorder prediction 1 15 - -
Vimu3g00341 774 PANTHER PHOSPHORIBOSYLANTHRANILATE TRANSFERASE ISOFORM 1 6 774 IPR047259 -
Vimu3g00341 774 FunFam C2 domain-containing protein 35 179 - -
Vimu3g00341 774 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 40 177 IPR035892 -
Vimu3g00341 774 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 201 354 IPR035892 -
Vimu3g00341 774 CDD C2C_MCTP_PRT_plant 202 352 IPR047258 -
Vimu3g00341 774 ProSiteProfiles C2 domain profile. 181 305 IPR000008 -
Vimu3g00341 774 FunFam C2 domain-containing protein 188 333 - -
Vimu3g00341 774 ProSiteProfiles C2 domain profile. 22 142 IPR000008 -
Vimu3g00341 774 Pfam Plant phosphoribosyltransferase C-terminal 619 774 IPR013583 -
Vimu3g00341 774 Pfam C2 domain 364 474 IPR000008 -
Vimu3g00341 774 Pfam C2 domain 40 142 IPR000008 -
Vimu3g00341 774 Pfam C2 domain 201 307 IPR000008 -
Vimu3g00341 774 Gene3D C2 domain 24 162 IPR035892 -
Vimu3g00341 774 Gene3D C2 domain 188 333 IPR035892 -
Vimu3g00341 774 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 363 503 IPR035892 -
Vimu3g00341 774 MobiDBLite consensus disorder prediction 1 23 - -
Vimu3g00341 774 FunFam C2 domain-containing protein 346 498 - -
Vimu3g00341 774 CDD C2B_MCTP_PRT_plant 40 164 IPR047257 -
Vimu3g00341 774 SMART C2_3c 202 300 IPR000008 -
Vimu3g00341 774 SMART C2_3c 40 136 IPR000008 -
Vimu3g00341 774 SMART C2_3c 364 471 IPR000008 -
Vimu3g00341 774 CDD C2D_MCTP_PRT_plant 364 491 IPR047255 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g00341 Vimu-Chr3 3253206 3255530 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g00341 1 774 Lipid Metabolism Gene Families AT3G57880 90.956 0.0 1493
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g00341 - - zju:107407989 1489.17
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g00341 3 3253206 3255530 Vimu4g01476 4 15440934 15443597 ECH
Vimu3g00341 3 3253206 3255530 Vimu3g00341 3 3253206 3255530 ECH
Vimu6g02968 6 26190850 26195448 Vimu3g00341 3 3253206 3255530 PCT