Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g01476 ATGATTTCAATAAAGAGAAGACAAAGAGGTGCTCCAGCCACAATGAATGCTCCAGCCACAATGCACTCAGTTGGTCCTCAAGTTCATGCCAGTAGGCAAGATGAAGAGTACAATCTGAGGGAGACTGATCCACAGCTCGGGGGGGAGCGGTGGCCAAATGCCAGAAGAGGGTGGATGACCGGTGGTGAAAGATTCTCAAGCACACATGACCTTGTTGAGCAGATGTTCTTTCTGTATGTAAGGGTAGTGAAAGCCAAGGATCTTCACCGCAGCACTCTTACCTCAAGATGTGATCCTTATGTGGAAGTGAAGCTGGGGAACTACAAAGGGAGAACAAAGCACATAGAGAATAAAACAAACCCAGAATGGAACCAAGTCTACGCTTTCTCCAAAGACAGAATTCAATCTTCTGTTTTGGAAGTCATAGTGAAAGACAAAGAAATGTTGGGAAGAGATGATTGTATTGGAAGGGTGGCATTTGATCTCAACGAGGTTCCAACCAGAGTTCCCCCGGATAGTCCACTGGCTCCTCAGTGGTACAGACTCGATGACCGGCGAGGAGGTGGTGATATCATGCTTGCAGTGTGGATGGGAACTCAAGCTGATGAGGCCTTCTCAGAGGCTTGGCATTCTGATGCTGCCACTGTGTATGGAGAAGGTGTTTTCAATGTCAGATCAAAGGTTTATCTGTCACCAAAACTGTGGTATCTCAGAGTGAATGTCATTGAAGCACAAGATGTGATACCAAGTGAAAGAAACCGGTTGCCAGAGGTGTTTGTCAAGGCTCAGATGGGGAGCCAAGTGCTGAAGACCAAGATATGTCCAACTAGAACAACCACACCAATTTGGAACGAAGATTTGGTCTTTGTGGCAGCTGAACCATTTGAGGAGAAGTTGACAATCACTGTGGAGGATCGCGTGCACCCTTCAAAAGATGAAGTACTTGGGAAGATAGTCTTGCCACTGACCCTCTTTGAGAAGAGGCTAGACCACAGGGCAGTTCATTCGCGCTGGTTTAATCTTGAGAAGTTTGGTTTTGGAATGATGGAAGCTGATAGGAGAAATGAGCTCAAATTTTCAAGCAGGATTCACCTAAGAATTTGCCTTGAAGGTGGATACCACGTCCTTGATGAGTCCACTTTGTACTCAAGTGACCAAAGACCAACAGCTAGACAGCTATGGAAGCAGCCTATCGGGGTACTTGAAGTAGGCATCTTGGGAGCACAAGGACTCCTCCCAATGAAGATGAGGGATGGCCATGGCAGCACAGATGCATACTGTGTGGCAAAGTACGGTCAAAAATGGGTCAGAACTAGAACAATTCTTGACTCTCACAGTCCAAAATGGAATGAGCAATACACATGGGAGGTTTATGATCCATGCTCTGTGATAACACTTGGTGTTTTTGACAACTGCCATTTAGGTGGGGGCGAAAAAGCCACTGCAGGCACTGCAGCCAGGGATTCAAGAATTGGAAAGGTAAGGATTAGACTGTCAACACTTGAAGCTCATAGGATATACACTCATAGTTATCCACTTCTTGTTTTGCACCCTCATGGTGTCAAGAAAATGGGTGAGGTTCAGTTAGCCGTGAGGTTCACTAGCCTGTCACTGGCTAACATGGTTTACATTTATGGCCAACCATTGCTTCCAAAGATGCATTACTTGCGCCCTTTCACAGTAAACCAGATAGAGAGTTTGAGGTACCAAGCCATGAACATTGTGGCCGGGAGGCTTGGAAGAGCTGAACCTCCCCTGAGGAAGGAGGTGGTGGAGTACATGTTGGATGTTGACTCCAACATGTGGAGCATGAGAAGAAGCAAAGCCAACTTCTTCCGCATCATGTCACTTTTCTCTGGCATCATCACAATGGGGCAGTGGTTTAGCCAAGTTTGCCATTGGAAGAACCCCATCACATCCGTCCTGGTTCACATTCTCTTACTCATACTCATTTGCTACCCTGAATTGATACTTCCAACTTTGTTCCTCTACATGTTCTTGATCGGCCTGTGGAACTATAGGTTTAGGCCTAGAAACCCACCCCACATGGACACAAAACTCTCATGGGTAGAAGCAGTTCACCCTGATGAACTTGATGAAGAGTTTGACACATTCCCAACTTCTAGACCGCATGATGTGGTGAGAATGAGGTATGACAAGCTTAGAAGTGTTGCTGGAAGGATCCAAACAGTGGTTGGGGACATAGCAACGCAG 2214 0.4639 MISIKRRQRGAPATMNAPATMHSVGPQVHASRQDEEYNLRETDPQLGGERWPNARRGWMTGGERFSSTHDLVEQMFFLYVRVVKAKDLHRSTLTSRCDPYVEVKLGNYKGRTKHIENKTNPEWNQVYAFSKDRIQSSVLEVIVKDKEMLGRDDCIGRVAFDLNEVPTRVPPDSPLAPQWYRLDDRRGGGDIMLAVWMGTQADEAFSEAWHSDAATVYGEGVFNVRSKVYLSPKLWYLRVNVIEAQDVIPSERNRLPEVFVKAQMGSQVLKTKICPTRTTTPIWNEDLVFVAAEPFEEKLTITVEDRVHPSKDEVLGKIVLPLTLFEKRLDHRAVHSRWFNLEKFGFGMMEADRRNELKFSSRIHLRICLEGGYHVLDESTLYSSDQRPTARQLWKQPIGVLEVGILGAQGLLPMKMRDGHGSTDAYCVAKYGQKWVRTRTILDSHSPKWNEQYTWEVYDPCSVITLGVFDNCHLGGGEKATAGTAARDSRIGKVRIRLSTLEAHRIYTHSYPLLVLHPHGVKKMGEVQLAVRFTSLSLANMVYIYGQPLLPKMHYLRPFTVNQIESLRYQAMNIVAGRLGRAEPPLRKEVVEYMLDVDSNMWSMRRSKANFFRIMSLFSGIITMGQWFSQVCHWKNPITSVLVHILLLILICYPELILPTLFLYMFLIGLWNYRFRPRNPPHMDTKLSWVEAVHPDELDEEFDTFPTSRPHDVVRMRYDKLRSVAGRIQTVVGDIATQ 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g01476 738 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 77 213 IPR035892 -
Vimu4g01476 738 MobiDBLite consensus disorder prediction 1 52 - -
Vimu4g01476 738 Pfam C2 domain 235 341 IPR000008 -
Vimu4g01476 738 Pfam C2 domain 399 513 IPR000008 -
Vimu4g01476 738 Pfam C2 domain 78 180 IPR000008 -
Vimu4g01476 738 Gene3D C2 domain 381 537 IPR035892 -
Vimu4g01476 738 Gene3D C2 domain 66 197 IPR035892 -
Vimu4g01476 738 Gene3D C2 domain 223 369 IPR035892 -
Vimu4g01476 738 FunFam C2 domain-containing protein 382 537 - -
Vimu4g01476 738 SMART C2_3c 236 336 IPR000008 -
Vimu4g01476 738 SMART C2_3c 400 510 IPR000008 -
Vimu4g01476 738 SMART C2_3c 77 174 IPR000008 -
Vimu4g01476 738 FunFam C2 domain-containing protein 72 214 - -
Vimu4g01476 738 Pfam Plant phosphoribosyltransferase C-terminal 658 738 IPR013583 -
Vimu4g01476 738 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 235 390 IPR035892 -
Vimu4g01476 738 ProSiteProfiles C2 domain profile. 59 180 IPR000008 -
Vimu4g01476 738 ProSiteProfiles C2 domain profile. 382 511 IPR000008 -
Vimu4g01476 738 CDD C2C_MCTP_PRT_plant 236 388 IPR047258 -
Vimu4g01476 738 PANTHER PHOSPHORIBOSYLANTHRANILATE TRANSFERASE ISOFORM 1 27 738 IPR047259 -
Vimu4g01476 738 CDD C2D_MCTP_PRT_plant 400 530 IPR047255 -
Vimu4g01476 738 CDD C2B_MCTP_PRT_plant 77 199 IPR047257 -
Vimu4g01476 738 ProSiteProfiles C2 domain profile. 216 339 IPR000008 -
Vimu4g01476 738 FunFam C2 domain-containing protein 222 369 - -
Vimu4g01476 738 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 399 535 IPR035892 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g01476 Vimu-Chr4 15440934 15443597 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g01476 30 738 Lipid Metabolism Gene Families AT5G06850 74.198 0.0 1145
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g01476 - - gmx:100785340 1382.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02968 6 26190850 26195448 Vimu4g01476 4 15440934 15443597 ECH
Vimu3g00341 3 3253206 3255530 Vimu4g01476 4 15440934 15443597 ECH
Vimu4g01476 4 15440934 15443597 Vimu4g01476 4 15440934 15443597 ECH