Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02877 ATGGAGTTCAAAGTTGTGGAGGAAGGCGTGCAGAAAAGAATCAGAGAGCCACTGGTGGAGAAACCGGACCATCAGTTGGTCCATGCAATCAAAGGGCATCCATGGATGCTTTATTTTTGTACATTCGTTGCAGTGTGTGGTTCTTATGAATTTGGTACTTGTGCTGGATATTCATCTCCCACTCAAGATGCTATCAGGAAGGATTTCAACCTGTCTTTGGCAGAGTACTCCTTGTTTGGCTCAATCTTGACTTTTGGTGCGATGGTTGGCGCAATAACAAGTGGGCCTATTGCTGATTTCCTTGGACGAAAAGGAGCAATGAGAGTGTCAAGTGCTTTCTGTGTCGGGGGCTGGCTTGCTATTTACTTTTCTGAGGGTCCCGTGCCTCTGGACATTGGGAGGCTAGCAACAGGATATGGAATGGGAGTTTTTTCATATGTGGTTCCTGTCTTTATAGCAGAAATAGCACCTAAAGAACTCCGAGGGACATTGACTACCTTAAATCAGTTCATGATCGTTGCTGCTGTGTCAGTGGCATTCACCATTGGAAATGTACTTTCGTGGAGAGCTTTAGCTTTGACTGGTGAGTCTGACCTATTTAAATATAGTTCTAAGGATATTGGCCTAATTCCCACTTCTGTATTGCTACTGGGTCTGTTTATAATTCCAGAGTCTCCGAGATGGCTAGCGAAGAGAGGACGTCAAAAAGATTTTGAAGCAGCACTGCAAATACTTCGTGGCAAAGATGCTGATATATCAGAGGAGGCAGAGGAAGTTCAGGAATACATAACTACTTTGGAGCAGCTCCCAAAATCTAGGCTACTGGAATTGTTTCACAGAAGATATTTGCGCTCAGTCACTATAGGAATAGGCCTAATGGTCTGCCAGCAGTTTGGAGGAATCAATGGAATTTGCTTTTATACCAGCAGTATTTTTGAACTAGCAGGATTTTCTCCCGCCATCGGAACTATATCATATGCTTGCCTTCAGGTTGTTGTCACAGGTCTTGGAGCTGTCTTAATCGATAAAACTGGGAGGAAGCCCCTACTTCTATTATCCGGAACGGGATTGGTCGCAGGGTGTGCATTTTTAGCAGTTGCATTCTATCTCAAGGTCTACGAGGTGGGTGTTGCAGCTGTTCCAGCACTTGCATTAATAGGCATACTGGTCTACATAGGATCATTCTCAATAGGAATGGGAGCAATTCCATGGGTTGTGATGTCCGAGATATTTCCTGTCAATATTAAAGGGCAAGCTGGAAGTTTGGCCACATTAACGAACTGGTTTGGTGCATGGCTATGTTCCTATACTTTCAACTTTCTCATGAGCTGGAGTTCTTATGGTACCTTCATTCTTTATGCAGCAATTAATGCATTGGCTATATTATTTATAATTTTTGCGGTGCCAGAAACCAAGGGGAAAAGCTTGGAACAATTACAAGCAGCAATTAACTCATAA 1458 0.4335 MEFKVVEEGVQKRIREPLVEKPDHQLVHAIKGHPWMLYFCTFVAVCGSYEFGTCAGYSSPTQDAIRKDFNLSLAEYSLFGSILTFGAMVGAITSGPIADFLGRKGAMRVSSAFCVGGWLAIYFSEGPVPLDIGRLATGYGMGVFSYVVPVFIAEIAPKELRGTLTTLNQFMIVAAVSVAFTIGNVLSWRALALTGESDLFKYSSKDIGLIPTSVLLLGLFIIPESPRWLAKRGRQKDFEAALQILRGKDADISEEAEEVQEYITTLEQLPKSRLLELFHRRYLRSVTIGIGLMVCQQFGGINGICFYTSSIFELAGFSPAIGTISYACLQVVVTGLGAVLIDKTGRKPLLLLSGTGLVAGCAFLAVAFYLKVYEVGVAAVPALALIGILVYIGSFSIGMGAIPWVVMSEIFPVNIKGQAGSLATLTNWFGAWLCSYTFNFLMSWSSYGTFILYAAINALAILFIIFAVPETKGKSLEQLQAAINS 485
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02877 485 PANTHER - 32 480 - -
Vimu6g02877 485 CDD MFS_GLUT6_8_Class3_like 38 478 IPR044775 GO:0008643|GO:0051119
Vimu6g02877 485 FunFam sugar transporter ERD6-like 6 31 483 - -
Vimu6g02877 485 SUPERFAMILY MFS general substrate transporter 33 479 IPR036259 -
Vimu6g02877 485 Gene3D MFS general substrate transporter like domains 31 485 IPR036259 -
Vimu6g02877 485 ProSiteProfiles Major facilitator superfamily (MFS) profile. 36 472 IPR020846 GO:0022857
Vimu6g02877 485 NCBIfam sugar porter family MFS transporter 35 478 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu6g02877 485 PRINTS Sugar transporter signature 296 306 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu6g02877 485 PRINTS Sugar transporter signature 408 420 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu6g02877 485 PRINTS Sugar transporter signature 131 150 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu6g02877 485 PRINTS Sugar transporter signature 385 406 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu6g02877 485 Pfam Sugar (and other) transporter 48 481 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vimu6g02877 485 ProSitePatterns Sugar transport proteins signature 1. 94 111 IPR005829 GO:0016020|GO:0022857|GO:0055085
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02877 Vimu-Chr6 25380671 25384547 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02877 2 484 Organic Solute Cotransporters AT5G18840 56.967 0.0 543
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02877 K03444 - gmx:100819822 804.668
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02877 6 25380671 25384547 Vimu2g01766 2 12711257 12715165 ECH
Vimu6g02877 6 25380671 25384547 Vimu6g02877 6 25380671 25384547 ECH
Vimu6g02877 6 25380671 25384547 Vimu2g01773 2 12780963 12784638 ECH