Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01773 ATGGGCATCAGAGGCAGTGAAGGAAGTCTAAACTCAACTCCTCTGCTGTCTTCCAGCAAAGATGGAGTTGATTTCCATGAAGATGAGCGAAGTGAAGCTTCTCAGATGACATTTATGCTTGTTTTCACCGCCGTTTCTGCTACCATTGGTTCTTACGTTTTTGGGTTAGCTCTCGCATATTCATCCCCTGCTCAGTATGGAATCGTGCACGACCTGAATCTCTCTGTCGCCGAGTACTCAACTTTTGGTTCAATATTGACGATTGGAGCGATAGTTGGTGCCACTTTAAGTGGTAGAATAGCAGATTATGTGGGTCGGCGATTGGCCATGGGTTTCTCGGAGGTTTTCTGCATCTTGGGATCAGTTATCATAGCATTCTCAAAGGTTTCTTGGTGGCTTTATATTGGAAGAATGTTGGTAGGATGTGGGGTTGGCATCATATCTTATGTGGTTCCAGTATACATAGCAGAAATAACACCCAAGGATCTCAGAGGAGCATTTACAGAAGGTCATCTGTTAATGACTTGTTGTGGATTGTCATTAACTTATCTTATTGGCGCATTTTTGAATTGGCGGATTTTGGCATTGATTGGAACTGTTCCTTGTATTGTGCACCTTCTGACTCTTCCCTTCATACCTGATTCTCCCAGGTGGCTGGCTAAGGTTGGTCGGATGAAAGAGAGTGAGTCTGCTCTACAGCGCCTAAGAGGAAAGCATGCTGATGTTTATGAGGAGGCCACTGAAATCAGAGAATACACAGAAGCCCTTCAGCAACACACAGAAAAAGGCAATATTATTGTCTTATTTAAGTTGCAGTATTTAAGGACACTTACTGTAGGTGTAGGCTTGATGATGCTGCAACAGTTTGGAGGGATTAGTGGCATTCTTTTCTATACAAATTCCATATTTATCTCTGCTGGATTTTCAGACACTATTGGAACAATAGCAGTGGGTGTCTTCAAGGTCTCATTTTCATTTTTAGGAGTACTTTTGATGGATAAATGTGGAAGACGACCACTTTTACTGGCTTCTGCTACAGGAGCATGTGTAGGAAGCTTCCTGACAGCCCTATCATTCTTCTTGAAGGATTTACAGGAATGGAAGTCAATAAGTCCCTTTATAGCGCTTGTTGGTGTACTGGTATACATGGGATTGTTCTCGCTAGGCATGTCTGGAATTCCGTCTGTTATAATGTCTGAGATATTTCCCATTAATGTGAAGGGCACTGCTGGAAGCTTAGTAATCTTGGTTAACTGGACATGTTCATTGATTGTTGCATATACCTTTAACTTTCTCATGAGTTGGAGTTCATCAGGAACTTTCTTCTTGTTCTCTGGCATATGTGCCAGCACTGTTGTTTTCGTAGCAAAACTAGTACCAGAGACCAAGGGGCGTACACTAGAGGAAATTCAAGCTTCTTTGAATAGCTTATGA 1434 0.4226 MGIRGSEGSLNSTPLLSSSKDGVDFHEDERSEASQMTFMLVFTAVSATIGSYVFGLALAYSSPAQYGIVHDLNLSVAEYSTFGSILTIGAIVGATLSGRIADYVGRRLAMGFSEVFCILGSVIIAFSKVSWWLYIGRMLVGCGVGIISYVVPVYIAEITPKDLRGAFTEGHLLMTCCGLSLTYLIGAFLNWRILALIGTVPCIVHLLTLPFIPDSPRWLAKVGRMKESESALQRLRGKHADVYEEATEIREYTEALQQHTEKGNIIVLFKLQYLRTLTVGVGLMMLQQFGGISGILFYTNSIFISAGFSDTIGTIAVGVFKVSFSFLGVLLMDKCGRRPLLLASATGACVGSFLTALSFFLKDLQEWKSISPFIALVGVLVYMGLFSLGMSGIPSVIMSEIFPINVKGTAGSLVILVNWTCSLIVAYTFNFLMSWSSSGTFFLFSGICASTVVFVAKLVPETKGRTLEEIQASLNSL 477
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01773 477 ProSitePatterns Sugar transport proteins signature 1. 97 113 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vimu2g01773 477 Coils Coil 467 477 - -
Vimu2g01773 477 Pfam Sugar (and other) transporter 48 472 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vimu2g01773 477 MobiDBLite consensus disorder prediction 1 19 - -
Vimu2g01773 477 FunFam sugar transporter ERD6-like 6 34 474 - -
Vimu2g01773 477 SUPERFAMILY MFS general substrate transporter 21 471 IPR036259 -
Vimu2g01773 477 PANTHER - 32 471 - -
Vimu2g01773 477 CDD MFS_GLUT6_8_Class3_like 41 469 IPR044775 GO:0008643|GO:0051119
Vimu2g01773 477 PRINTS Sugar transporter signature 134 153 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu2g01773 477 PRINTS Sugar transporter signature 399 411 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu2g01773 477 PRINTS Sugar transporter signature 376 397 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu2g01773 477 PRINTS Sugar transporter signature 287 297 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu2g01773 477 NCBIfam sugar porter family MFS transporter 43 470 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu2g01773 477 Gene3D MFS general substrate transporter like domains 32 476 IPR036259 -
Vimu2g01773 477 MobiDBLite consensus disorder prediction 1 23 - -
Vimu2g01773 477 ProSiteProfiles Major facilitator superfamily (MFS) profile. 43 463 IPR020846 GO:0022857
Vimu2g01773 477 Coils Coil 225 245 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01773 Vimu-Chr2 12780963 12784638 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01773 26 475 Organic Solute Cotransporters AT5G18840 52.412 8.13e-155 447
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01773 K03444 - gmx:100817150 662.529
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02877 6 25380671 25384547 Vimu2g01773 2 12780963 12784638 ECH
Vimu2g01773 2 12780963 12784638 Vimu2g01773 2 12780963 12784638 ECH