Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01766 ATGAACCTCTCTCACATTTCCTCTGCTTCTCATAGAACGCAAAATATGGACAACAAAACTACCGAACCAAGCGATTTTACAAGCCCTCTTCTCCCTACAAGTTATGGTGCTCATGTTGTTGGCGTTGACTTTCTGGAAAAGAGGCACACTGGAGCTTCTTCCGTTCCAACTACTCTTATACTCACCACCCTCGTTGCTGTTTTTGGTTCCTACGTTTTTGGCTCTGCTATTGGGTACTCATCACCAACTCAATCTGGAATCATGCGTGATCTCAACCTCGGAGTGGCCCAGTACTCAATTTTTGGTTCGATATTGACTATTGGAGCTATGATTGGTGCTGTTGTTAGTGGTAGAATAGCAGATTATGCAGGTCGTCGAGTTGCCATGGGGTTGTCCCAGATTTTCTGCATCTTGGGATGGTTTGCCATAACATTCTCAAAGATTGCTTGGTGGCTTTATGTTGGAAGACTGTTGATAGGATGTGGGATTGGCCTTCTATCTTACGTGGTACCTGTTTATGTAGCAGAAATAACAACCAAGAATCTTCGAGGGGCATTCACTGGAGTTCATCAGTTAATGATTTCTTGTGGGATGTCATTAACTTATCTTATTGGAGCATATGCCAATTGGAGGATCTTGGCTCTAATAGGAATTATTCCGTGCCTTGTGCAGCTTCTCTGTCTGCCCTTCATTCCCGATTCTCCCAGGTGGCTGGCCAAGGTCGGTCGGTTAAAAGAGAGTGATTCTGCTCTACAGCACCTCAGGGGTAAGAATGCTGATGTTTATCAAGAGGCCACTGAAATTAGAGACTATACCGAAGCCTTTCAGAAGCAAACAGAAGCTAGCATCATTGGCCTATTCCGAATGCAGTATTTGAAGTCACTTATTGTAGGAGTTGGCTTGATGATACTACAACAGTTTGGAGGGATTAATGGCATTGTTTTCTATGCAAACTCTATATTTATATCTGCTGGTATGTGCACCTCCTTTTCTATGCTCCATTATATGGCAAGGTTTTCAGAAAGTATTGGAACAGTAGCGATGGTCGCCATTAAGATTCCAATGACAACTTTAGGGGTACTTCTAATGGATAAATCTGGAAGAAGGCCACTTCTGCTGGTGTCAGCAGTTGGAACATGCTTAGGATGCTTCCTGGCAGCCTTGTCATTCGTCTTGCAGGACTTGCATAAATGGAAGGAAGTTAGCCCCATTATGGCCCTAATAGGTGTACTGGTAATGTTCTTCCCCTTTATGCCTATATAG 1263 0.4355 MNLSHISSASHRTQNMDNKTTEPSDFTSPLLPTSYGAHVVGVDFLEKRHTGASSVPTTLILTTLVAVFGSYVFGSAIGYSSPTQSGIMRDLNLGVAQYSIFGSILTIGAMIGAVVSGRIADYAGRRVAMGLSQIFCILGWFAITFSKIAWWLYVGRLLIGCGIGLLSYVVPVYVAEITTKNLRGAFTGVHQLMISCGMSLTYLIGAYANWRILALIGIIPCLVQLLCLPFIPDSPRWLAKVGRLKESDSALQHLRGKNADVYQEATEIRDYTEAFQKQTEASIIGLFRMQYLKSLIVGVGLMILQQFGGINGIVFYANSIFISAGMCTSFSMLHYMARFSESIGTVAMVAIKIPMTTLGVLLMDKSGRRPLLLVSAVGTCLGCFLAALSFVLQDLHKWKEVSPIMALIGVLVMFFPFMPI 420
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01766 420 Gene3D MFS general substrate transporter like domains 46 420 IPR036259 -
Vimu2g01766 420 SUPERFAMILY MFS general substrate transporter 63 416 IPR036259 -
Vimu2g01766 420 PRINTS Sugar transporter signature 153 172 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu2g01766 420 PRINTS Sugar transporter signature 305 315 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu2g01766 420 PRINTS Sugar transporter signature 70 80 IPR003663 GO:0016020|GO:0022857|GO:0055085
Vimu2g01766 420 Pfam Sugar (and other) transporter 63 414 IPR005828 GO:0016020|GO:0022857|GO:0055085
Vimu2g01766 420 CDD MFS_GLUT6_8_Class3_like 60 417 IPR044775 GO:0008643|GO:0051119
Vimu2g01766 420 PANTHER - 57 415 - -
Vimu2g01766 420 MobiDBLite consensus disorder prediction 1 29 - -
Vimu2g01766 420 ProSitePatterns Sugar transport proteins signature 1. 116 132 IPR005829 GO:0016020|GO:0022857|GO:0055085
Vimu2g01766 420 ProSiteProfiles Major facilitator superfamily (MFS) profile. 62 420 IPR020846 GO:0022857
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01766 Vimu-Chr2 12711257 12715165 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01766 64 412 Organic Solute Cotransporters AT1G54730 62.464 3.78e-152 435
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01766 K03444 - gmx:100817150 652.514
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02877 6 25380671 25384547 Vimu2g01766 2 12711257 12715165 ECH
Vimu2g01766 2 12711257 12715165 Vimu2g01766 2 12711257 12715165 ECH