Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02502 ATGTTCTCTTCCTCTGCACCGTTTCCTTCATCTTCTTCGCCTTCAGTTATGATGCTTCATGAACAAGCTGCTCCAGCAGTTGCATCCTGGTCTTCTACTTCTACAGCTCGGCATTTTCCTACTTCTGTTCTCTTACAAGAACAGCGTGAGGAGTATAGGCCCCTACTGCACGCGTATAATAAGGAGGCAACATTAAATACAAGGCAGATGGATATGTCCTCAGTTCAAGAGAAATGCAATACAGGCAATCCTGATCAGTTAGTGCATGATTTTGTTCACCAGTTGCATCTCCGGTCTCATTTACAGAACTTACTGACTTGTTATCCTACTAGGGAAATTGCTGCTTCTTTGACTCTTCAGCCTGTTGACAACGATTCAGAGAGGCCTGCAGATGGTCTGCCAAGGAATGCGGTTTCTCTTGCTCAGCAAGCTTTGTCAGCCTCAAAGCAAGCGGCTTTATCAGTTGAAGTTGATGATGATGATGATCCACTTTCTTTTGGTTTGGCCTCCACAAGTTTGGCTGACTCTTCACTGAAAAGGAATAAAATTGTGAGATCAACACGGATTACAGAAAGACGATCTAAACAGAGAAAAGCATCAAAGTCAAATCTTCTTGATGAAGAAAGTTACCTTGACAGAAAATCTTTTTTACAGAGAAAGTTACGTTTAGAAAAGAAATTAAATGAAGGATTTGATCAAAATGACCCCCTGCGCATGTTCTTGTCGGGTTCTGAATCGAGGCAACTTTTGACCCGTGAAGAAGAGTCTCAATTGATTACTCAGCTTCAGGATTTCTCAAGATTGGAAGAAGTAAAGATCAGGCTTCAATCTCAGTTAAGACGGGAACCAACTTTAGCTGAATGGGCTGATGTCTTGGGCCTTAGTTGTTGTGCCCTGCAGACACAGCTTCATTGTGTTAACAGAAGCAAAGAAAAGCTGTTTCATGGCAATATGCGCATGGTAGTTCACATTGCTAAACATTATCAGGGACGTGGTCTCAGCCTTCAGGACTTATTTCAGGAGGGAAGTACGGGTCTTATGAAGAGCATTGACAAATTTAAACCAGGAGCTGGTTGCCGATTTGGTACTTACGCATACTGGTGGATAAGGCATTCAATAAGGAAGGCGATATTTCTGCATTCCAGGACTATCCGTATACCGGAGAATTTATATAGACTTTTGGGCAAGGTCATAGAAGCAAAGAAATTATTCATTCAGGAGGGAAACATTAACCCATCCAAAGAAGAATTAGCAAGAAGGGTGGGAATTACAGTAGACAAGTTGGAAACTTTACTATTTGCTTCAAGAAATCCAATTTCCATGCAGCAAGCTGTGTGGGCGGACCAAGAGACAACTTTCCAGGAGATTACTGCAGACTCAGCAATTGAGATCCCAGATGTGTGTGTTTCAAAACAGCTAATGAGGAGGCATGTGCACAACCTCCTAAATATGTTAAGCCCTAAAGAAAAGAGCATAATCAGGCTAAGATTTGGTATTGAAGATGGCAAGGAAAAAACGTTGTCAGATATTGGCAAGGTTTTTGGTTTGACCAAGGAAAGAGTCCGACAGTTGGAGAGCCGAGCATTGTCCAAGCTCAAGGAGTGTCTTGAAAGTCAAGGACTTGACTCATACACAGACTTGCTTATATAG 1650 0.4212 MFSSSAPFPSSSSPSVMMLHEQAAPAVASWSSTSTARHFPTSVLLQEQREEYRPLLHAYNKEATLNTRQMDMSSVQEKCNTGNPDQLVHDFVHQLHLRSHLQNLLTCYPTREIAASLTLQPVDNDSERPADGLPRNAVSLAQQALSASKQAALSVEVDDDDDPLSFGLASTSLADSSLKRNKIVRSTRITERRSKQRKASKSNLLDEESYLDRKSFLQRKLRLEKKLNEGFDQNDPLRMFLSGSESRQLLTREEESQLITQLQDFSRLEEVKIRLQSQLRREPTLAEWADVLGLSCCALQTQLHCVNRSKEKLFHGNMRMVVHIAKHYQGRGLSLQDLFQEGSTGLMKSIDKFKPGAGCRFGTYAYWWIRHSIRKAIFLHSRTIRIPENLYRLLGKVIEAKKLFIQEGNINPSKEELARRVGITVDKLETLLFASRNPISMQQAVWADQETTFQEITADSAIEIPDVCVSKQLMRRHVHNLLNMLSPKEKSIIRLRFGIEDGKEKTLSDIGKVFGLTKERVRQLESRALSKLKECLESQGLDSYTDLLI 549
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02502 549 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 233 383 IPR013325 GO:0003700|GO:0006352|GO:0006355
Vimu6g02502 549 Gene3D - 142 382 - -
Vimu6g02502 549 Gene3D - 386 463 IPR036388 -
Vimu6g02502 549 Pfam Sigma-70 region 2 314 377 IPR007627 GO:0003700|GO:0006352|GO:0006355
Vimu6g02502 549 Pfam Sigma-70 region 3 393 465 IPR007624 GO:0003700|GO:0006352|GO:0006355
Vimu6g02502 549 PRINTS Major sigma-70 factor signature 506 521 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vimu6g02502 549 PRINTS Major sigma-70 factor signature 361 369 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vimu6g02502 549 PRINTS Major sigma-70 factor signature 337 350 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vimu6g02502 549 PRINTS Major sigma-70 factor signature 521 532 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vimu6g02502 549 PRINTS Major sigma-70 factor signature 485 497 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vimu6g02502 549 Pfam Sigma-70, region 4 482 534 IPR007630 GO:0003700|GO:0006352|GO:0006355
Vimu6g02502 549 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 136 545 - -
Vimu6g02502 549 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 447 545 IPR013324 -
Vimu6g02502 549 NCBIfam sigma-70 family RNA polymerase sigma factor 311 536 IPR014284 GO:0003700|GO:0006352|GO:0006355
Vimu6g02502 549 CDD Sigma70_r4 475 533 - -
Vimu6g02502 549 ProSitePatterns Sigma-70 factors family signature 2. 506 532 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vimu6g02502 549 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 386 459 IPR013324 -
Vimu6g02502 549 Gene3D - 469 548 IPR036388 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02502 Vimu-Chr6 21777414 21781818 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02502 - - gmx:100815699 885.174
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02502 6 21777414 21781818 Vimu6g02502 6 21777414 21781818 ECH
Vimu6g02502 6 21777414 21781818 Vimu3g01240 3 21738397 21744767 PCT
Vimu3g01281 3 22794268 22800430 Vimu6g02502 6 21777414 21781818 PCT