Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01240 CCCCGCCATGGTGGCAAGGAAACAGCACCTGCGTTTCCTCTGCACAATGATCACGCTGCAACCTTCTTCTGCTACCAACTCACCACTCTAATGTACTATGCTGTTCTTCTCGTTCCTATGGAGTTCGCAAGGACTATGTTTTGTTCGTCTCCACCGTTTCCTCCAAGAACTCACCCTTGGAATACTCACTCCTCGTCCTCTTCTACTTCCGATTTCTATGTTCATGAACCTGCAGTTTTGATGCTACGTGAACAAGCTTCCACTGCAGTTGCCTCTTGGTCCTCTAATTTTTCAGCACAGAATTTCCCTGCCTCAGTTCTTTTACAAGAGCAGCGTGATGAATATAGGCCTCTTCTTCACATGTCTAAGGAAGACAAAACATCTCAGGTTGTGATTCGTAAGTTTTTCCTGCATTGTGACATATTGCACACAGTACCAGTTAATCTTCCCAATGTTTTACTGCAGGCAATTTTAAATACAAGGCAGATGGATATGGACACGGTTCATGAAGAGAATAACACTGGAAATGCTGACCAGGTAGTGCTGGACTTTAGGAAGCACCTGCATCTCTGGCCTCGTTTACAGAACTTATTAACTTCATCCCAAACAGGAGAAATTGCTGCTTCTTCAACTCTACAGCATATTTCTGTTGACTCGGAGAGACACACAGATAGCGTGCAATGTAATGGAGTTTCTCTTGCTAAGAAAGCTTTGTCTACCGCAAAACAAGCATCCTTAGTTGTTGAAGGCCTGAAATCAACTAAAGCTGATGATGATTCAATTCCCTTAGGTCTGGCTTCCACTAGTTTGGCGGACCCTTCGATTGGAAGAAATAAAACTGTGAGGTCAACGCGGCTTTTAGAGAGACGAGCAAAACAAAGAAAAGTACCTAAGTCGGTAGTTAAAGATGATGAAGCCTACGATACAAGAAAGGATGACTCTCAAGAAAGGCTACGCAAAGAAAAGAACATAAATGAAGAATTTGATCACAATGATACCCTACGCATGTTCTTGAGGGGTCCTGAAACAAAACAACTTTTGACACTTGAACAAGAATCTGAACTGATTTCTCAGATACAGGACTTATTGAAATTGGAAGAATTGAAGACCAAACTCCAATCTCAATTTGGTAGGGAACCAACTATGGCTGAATGGGCTGAGGGTGCGGGACTTAACTCTCGAAAGCTCCATGCTCAGCTTCATCATGGAAACAAAAGCAGAGAAAAGTTGATTCAAGCAAATTTACGCATGGTAGTCCATGTTGCCAAAAGTTATCAGGGACGTGGTCTCAGCCTTCAGGACTTATTACAGGAAGGTAGTATGGGCCTTATGAAGAGTGTGGAAAAATTCAATCCCCTAGCCGGTTCCCGATTTGGTAATTATGCATTCTGGTGGATAAGGCAAGCAATAAGGAAAGCGGTGTTTAGACATTCCAGGACAATCCGTCTGCCGGAGAAGGTATATATCCAATTGGGCAAGGTAATGGAAGCAAAGAAATTGTACATTCAGGAAGGAAATCTTCACCCAACTAAAGAAGAATTAGCAAGAAGGGTTGGAATTACAGTAGAAAAGATTGACAAATTACTATATTCTGCAAGAACTCCAATTTCTATGCAGAAAACTGTGTGGGCTGACCAAGATACAACTTTCCAGGAGATTACTGCAGATCCCACAGTTGAGGCCACAGACTTGAGTGTTGAAAAACAGCTTATGAGGCGGCATGTGCTCAACGTCCTAACTATCCTGCGCCCCAAAGAAAGGAAAATAATCCGACTAAGATATGGTTTTGACGATGGTGAACAGAAATCTTTATCAGAAATTGGAGACATATTTGGTTTGTCTAAGGAAAGGGTTCGTCAATTGGAGATTCGAGCATTATATAAGCTTAAGAAGTGCCTTGTCAAACAAGGACTTGATGCTTATGTAGACTTGCTTTTATAA 1941 0.4209 PRHGGKETAPAFPLHNDHAATFFCYQLTTLMYYAVLLVPMEFARTMFCSSPPFPPRTHPWNTHSSSSSTSDFYVHEPAVLMLREQASTAVASWSSNFSAQNFPASVLLQEQRDEYRPLLHMSKEDKTSQVVIRKFFLHCDILHTVPVNLPNVLLQAILNTRQMDMDTVHEENNTGNADQVVLDFRKHLHLWPRLQNLLTSSQTGEIAASSTLQHISVDSERHTDSVQCNGVSLAKKALSTAKQASLVVEGLKSTKADDDSIPLGLASTSLADPSIGRNKTVRSTRLLERRAKQRKVPKSVVKDDEAYDTRKDDSQERLRKEKNINEEFDHNDTLRMFLRGPETKQLLTLEQESELISQIQDLLKLEELKTKLQSQFGREPTMAEWAEGAGLNSRKLHAQLHHGNKSREKLIQANLRMVVHVAKSYQGRGLSLQDLLQEGSMGLMKSVEKFNPLAGSRFGNYAFWWIRQAIRKAVFRHSRTIRLPEKVYIQLGKVMEAKKLYIQEGNLHPTKEELARRVGITVEKIDKLLYSARTPISMQKTVWADQDTTFQEITADPTVEATDLSVEKQLMRRHVLNVLTILRPKERKIIRLRYGFDDGEQKSLSEIGDIFGLSKERVRQLEIRALYKLKKCLVKQGLDAYVDLLL 646
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01240 646 PANTHER RNA POLYMERASE SIGMA FACTOR RPO 225 642 - -
Vimu3g01240 646 NCBIfam sigma-70 family RNA polymerase sigma factor 406 633 IPR014284 GO:0003700|GO:0006352|GO:0006355
Vimu3g01240 646 MobiDBLite consensus disorder prediction 293 321 - -
Vimu3g01240 646 ProSitePatterns Sigma-70 factors family signature 2. 603 629 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vimu3g01240 646 Pfam Sigma-70, region 4 579 631 IPR007630 GO:0003700|GO:0006352|GO:0006355
Vimu3g01240 646 CDD Sigma70_r4 572 630 - -
Vimu3g01240 646 Pfam Sigma-70 region 2 410 479 IPR007627 GO:0003700|GO:0006352|GO:0006355
Vimu3g01240 646 Pfam Sigma-70 region 3 491 559 IPR007624 GO:0003700|GO:0006352|GO:0006355
Vimu3g01240 646 Gene3D - 483 560 IPR036388 -
Vimu3g01240 646 Gene3D - 565 645 IPR036388 -
Vimu3g01240 646 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 543 642 IPR013324 -
Vimu3g01240 646 SUPERFAMILY Sigma3 and sigma4 domains of RNA polymerase sigma factors 483 556 IPR013324 -
Vimu3g01240 646 MobiDBLite consensus disorder prediction 292 321 - -
Vimu3g01240 646 Gene3D - 327 479 - -
Vimu3g01240 646 PRINTS Major sigma-70 factor signature 458 466 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vimu3g01240 646 PRINTS Major sigma-70 factor signature 603 618 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vimu3g01240 646 PRINTS Major sigma-70 factor signature 434 447 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vimu3g01240 646 PRINTS Major sigma-70 factor signature 582 594 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vimu3g01240 646 PRINTS Major sigma-70 factor signature 618 629 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vimu3g01240 646 ProSitePatterns Sigma-70 factors family signature 1. 434 447 IPR000943 GO:0003700|GO:0006352|GO:0006355
Vimu3g01240 646 SUPERFAMILY Sigma2 domain of RNA polymerase sigma factors 330 480 IPR013325 GO:0003700|GO:0006352|GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01240 Vimu-Chr3 21738397 21744767 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01240 - - vum:124824753 1022.31
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01240 3 21738397 21744767 Vimu3g01240 3 21738397 21744767 ECH
Vimu6g02502 6 21777414 21781818 Vimu3g01240 3 21738397 21744767 PCT