Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01281 ATGGGAAGTGTATGGGTCTGTTATTTCCCCACCTGCACCACTCTTCCTTGTCGCCACTGCATTTTCTCTCCAACGCACCTTCTTCATCACTCCACCACTCTCTCTATCCGCGCTAGCGCTTCTCAAACAACCACCAACGCAAGAACAAGAACAAGAAGGAGTCGGAGAATCAAGAGCGACGCCGAGATCTGCAACGATGTCCGCGAATTTCTCGCTTCGGTTGGCCTTCCGGATGACCACATTCCCTCCACCAAGGAACTTCTGCTCCACGGATGGAATGACCTGGCAAACATTGTCAGAAGGAGAGGGCATAAACAAATTCAGGAGCTTCTCACTGGCAGCTTATTAAAAGCTGATGCTGATTTTTTAAGTGCTGAAAATAGTTTAGACGAGAGATTGGACACCCCGATTATTTTTGAAGATCCCTTAACAGGTCAGAATGAAAAGATGGACAGTGTAATAGACAATGTCGAAATATCATCAGAATATTTTCTGGGAAGTAGTTCTAGTAGTTTGTATATGGATTCATCTTCAAGTTTAGGTGAAGGTACTGACACCGTGGAAGAATCCTTGGCTAATTTGACTATTGGGGGTGGTCTAAGAGAATTCAAAGATGAAGTGGTAAGCAATGCGACAAAGGAGAATTTGTACCCAAATGAAGTGACTATTGTGGATAATGATTCTGATAGTCTCTTTCTGAACTTCAGTAGCCAAAGTTCCATCATGCCTGCAGAAATCTCTGGTGAATTACCATTTGAAACAGTGTCTTCTGGAAATTCTGATTCTGAGGATAGTTTAGTGGGAAAAACAGTTGGGCAGTTAACCATGTGGACGGAAAACCATTCTGGCACTTTATTTAATGATTGTAATATTGATGCTGAAGAAAAAGAGTACAGTGATTTGGAGCAAAAGGACTTGGGTGCATTAGAAGGTCTAGATGATGACAATGCTGATGTTGAAAATGTTGCCACAATTTCTGAAGTTTCCACTTGGGAAAATTTATCTGGTGATGGCCGACTTGATTCCATTGTTAATTCTGCTGACAACAATCATGTCTCTGGCATTTCAATTTGGGATGATCCTCAGGAAAGCAAAGAGAATATTGAATCAGAACTAGACGTATATACTCTGCCAGGTAGCCATCCTCCTCAAGATAATAATGTCATGGCTCATGGGAACTCATTGACATCCAAACTAGATCTATCTGGACCATTGGATTTGGATAAGCCTCTTTGGGATGATCACTTGCCACATGAGGTTCTAACGACTCATTTTGACAGGAGCTCAGATACTGAGACTCCAAAAGTGCAAAACGAAAGTGAGATAAATCATCTCAAGTACATGCTGTATCAGAAGGAGTTGGAACTGTCTCGACTGAAGGAACAGATTGAAAAGGAAAAGCTTGCTTTGTCTATCTTGCAAACCAAGGCAGAAGCAGAAATCAGCAAAGCCCGAAAACTGATATCTGAAAAAGATGTAGAACTACAGTTTGCTGAAGAAAGTCTTTCAGGACTTAAGGAGGTTCAGATTGAATTCTGGGGTGATGGTGACATTGTGGAGGTGGCTGGTAGCTTCAACGGTTGGCATCACCGAATAAAACTGGATCCTCGACCATCAACTATTGCTTTAGACATTGGGGAATCAAGGAGTTCCAGATTTTGGTCAACAATACTGTGGCTTTATCCTGGTGTATATGAGATAAAATTTGTTGTTGATGGCAAATGGATAACAGATCATCGGAGGGAGTCGGTAACAAGAGGTCACATATGTAACAACATTCTAAGAGTAGATAGATGA 1797 0.4174 MGSVWVCYFPTCTTLPCRHCIFSPTHLLHHSTTLSIRASASQTTTNARTRTRRSRRIKSDAEICNDVREFLASVGLPDDHIPSTKELLLHGWNDLANIVRRRGHKQIQELLTGSLLKADADFLSAENSLDERLDTPIIFEDPLTGQNEKMDSVIDNVEISSEYFLGSSSSSLYMDSSSSLGEGTDTVEESLANLTIGGGLREFKDEVVSNATKENLYPNEVTIVDNDSDSLFLNFSSQSSIMPAEISGELPFETVSSGNSDSEDSLVGKTVGQLTMWTENHSGTLFNDCNIDAEEKEYSDLEQKDLGALEGLDDDNADVENVATISEVSTWENLSGDGRLDSIVNSADNNHVSGISIWDDPQESKENIESELDVYTLPGSHPPQDNNVMAHGNSLTSKLDLSGPLDLDKPLWDDHLPHEVLTTHFDRSSDTETPKVQNESEINHLKYMLYQKELELSRLKEQIEKEKLALSILQTKAEAEISKARKLISEKDVELQFAEESLSGLKEVQIEFWGDGDIVEVAGSFNGWHHRIKLDPRPSTIALDIGESRSSRFWSTILWLYPGVYEIKFVVDGKWITDHRRESVTRGHICNNILRVDR 598
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01281 598 CDD E_set_AMPKbeta_like_N 507 596 - -
Vimu3g01281 598 Pfam Glycogen recognition site of AMP-activated protein kinase 508 596 IPR032640 -
Vimu3g01281 598 Coils Coil 449 476 - -
Vimu3g01281 598 Gene3D Immunoglobulins 501 598 IPR013783 -
Vimu3g01281 598 PANTHER PROTEIN PTST HOMOLOG 3, CHLOROPLASTIC 13 598 - -
Vimu3g01281 598 SUPERFAMILY E set domains 505 596 IPR014756 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01281 Vimu-Chr3 22794268 22800430 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01281 - - var:108326329 1043.88
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01281 3 22794268 22800430 Vimu6g02502 6 21777414 21781818 PCT