Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02465 ATGAAGCGAATTTCGATTGCAATTTCACTAATATCCATCTTATTTTGTTCCGCAATATTAACTAGAGCTCTTCCTGAGGATGAACCTGAGTTTGGTTACGATGAAGATAGTGCAAATGGGCCTCAGTACTGGGGCGATATTAAAGAAGCATGGGAAACCTGCAAAACAGGGCAAATACAATCTCCTATTGATTTGTCCAGAAACGTTGTGCAAGTGATTCCCAAGTCAGGGAATCTCAAGTATTGGACCTATAACCCTCAATATGCCACTCTCTCCAACAGAGGTCATGATGTTGCAGTGGATTTGAGAGGGGATGCAGGCTCAATAGACATAGATGGATCATCTTTTTTCCTCCAACAAATCCATTGGCACTGGCCCTCCGAACATACCATCGACGGCAGGAGGTATGACTTGGAGTTGCACATGGTGCATGTTAGCCCACAGCCTGATGGAACAAACAAGACTGCTGTTGTTGGTGTTTTGTACGAGTACGGTTCTCCTGATCCATTGCTCTCTAGGGTGGAACAATACCTAGTTGACATTCCTAAAGAAAACGAAGAGGAAAGTGTTGGAGAAATTGATCCCTCAGAGATCATGAGTGGTAAGATGTTCTACAGGTACATAGGATCACTCACTGCACCTCCTTGCACCGAAGGCATCATTTGGACCATTGATAAGGAGATAAGAACTGTTTCAATAGGACAAGTGGAGTTACTGAAGAATACTGTACTTATACCTTATGCTCCAAGGAATGCAAGGCCACTACAGCCTCTAAATCAGAGGAACGTACGGCTCTACGTTAAGCCTCTGTATTAG 816 0.4375 MKRISIAISLISILFCSAILTRALPEDEPEFGYDEDSANGPQYWGDIKEAWETCKTGQIQSPIDLSRNVVQVIPKSGNLKYWTYNPQYATLSNRGHDVAVDLRGDAGSIDIDGSSFFLQQIHWHWPSEHTIDGRRYDLELHMVHVSPQPDGTNKTAVVGVLYEYGSPDPLLSRVEQYLVDIPKENEEESVGEIDPSEIMSGKMFYRYIGSLTAPPCTEGIIWTIDKEIRTVSIGQVELLKNTVLIPYAPRNARPLQPLNQRNVRLYVKPLY 271
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02465 271 SUPERFAMILY Carbonic anhydrase 30 264 IPR036398 -
Vimu6g02465 271 ProSitePatterns Alpha-carbonic anhydrases signature. 127 143 IPR018338 GO:0004089|GO:0008270
Vimu6g02465 271 CDD alpha_CA_prokaryotic_like 40 261 IPR041891 -
Vimu6g02465 271 Gene3D Alpha carbonic anhydrase 28 269 IPR036398 -
Vimu6g02465 271 ProSiteProfiles Alpha-carbonic anhydrases profile. 29 267 IPR001148 -
Vimu6g02465 271 SMART Carb_anhydrase_2a 33 267 IPR001148 -
Vimu6g02465 271 PANTHER CARBONIC ANHYDRASE 29 261 IPR023561 GO:0004089|GO:0008270
Vimu6g02465 271 Pfam Eukaryotic-type carbonic anhydrase 40 265 IPR001148 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02465 Vimu-Chr6 21474055 21475990 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02465 K01674 - gmx:100799362 403.29
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02465 6 21474055 21475990 Vimu3g01199 3 20459828 20462939 PCT
Vimu3g01198 3 20442796 20445664 Vimu6g02465 6 21474055 21475990 PCT