Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01199 ATGAATGATGAAATGAGATGCAGAGGTTTTGTTCGAAATCTGATAGTAGTTATGATCATAGTCCATTCAAGAAGATGGATTAGTGCACAGGAAGTTGAGGATGAGAGTGAGTTTGATTACATAAAAGAGAGTGAGAAGGGTCCCTCACACTGGGGGGAACTGAAGAAGGAATGGGAAACATGTAAAACTGGAAAAATGCAGTCTCCAATTGATTTGTCAAGCCACAGGGTCAGGCTGGTGCCAAAGTTGGGGCAGCTAAACAAGCACTATAAGCCTCAGAATGCTACTGTCAAGAACAGAGGCCATGATATTGAGCTGAAATGGGGAGAAGATGCTGGATCATTAAACATCAATGGCAGTGAATTTTTTCTGCGTCAGTGCCATTGGCACTCACCTTCAGAACATACCATCAATGGAAGAAGGTATGACTTGGAGCTCCACATGGTTCATGAAAGAAGAAGCGAAAATGGAAAAGTGAATATTGCTGTTGTTGGTCTTCTGTTCAAGATTGGTCGACCCGATCCCATTCTCAACAAGTTGTCAAAAATCATAGAAAGCATGGTGGATAATGAAGCAGAAAAGAAAATTGGGGTGTTTGATCCCTCAGAAATTAAGTTGGGTGGGAAGAAGTATTACAGATACATTGGCTCCCTCACTGTCCCTCCTTGCACAGAAGGTGTCATTTGGACTATCAATAAAAAGATCAAAAGTGTGTCCAGGGCACAAGTGAATTTACTTAGAGAGGCTGTTCACGATCATGCAGAGAAGAATTCGAGACCTGTACAAGCGCTGAATAAACGAGGGATACAACTCTATGGACCAAAACGCAAGGAATAA 837 0.4205 MNDEMRCRGFVRNLIVVMIIVHSRRWISAQEVEDESEFDYIKESEKGPSHWGELKKEWETCKTGKMQSPIDLSSHRVRLVPKLGQLNKHYKPQNATVKNRGHDIELKWGEDAGSLNINGSEFFLRQCHWHSPSEHTINGRRYDLELHMVHERRSENGKVNIAVVGLLFKIGRPDPILNKLSKIIESMVDNEAEKKIGVFDPSEIKLGGKKYYRYIGSLTVPPCTEGVIWTINKKIKSVSRAQVNLLREAVHDHAEKNSRPVQALNKRGIQLYGPKRKE 278
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01199 278 ProSitePatterns Alpha-carbonic anhydrases signature. 133 149 IPR018338 GO:0004089|GO:0008270
Vimu3g01199 278 SMART Carb_anhydrase_2a 40 273 IPR001148 -
Vimu3g01199 278 Pfam Eukaryotic-type carbonic anhydrase 47 270 IPR001148 -
Vimu3g01199 278 CDD alpha_CA_prokaryotic_like 47 271 IPR041891 -
Vimu3g01199 278 SUPERFAMILY Carbonic anhydrase 37 269 IPR036398 -
Vimu3g01199 278 ProSiteProfiles Alpha-carbonic anhydrases profile. 36 273 IPR001148 -
Vimu3g01199 278 PANTHER CARBONIC ANHYDRASE 35 267 IPR023561 GO:0004089|GO:0008270
Vimu3g01199 278 Gene3D Alpha carbonic anhydrase 34 277 IPR036398 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01199 Vimu-Chr3 20459828 20462939 Tandem
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01199 K01674 - gmx:100797935 463.766
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02465 6 21474055 21475990 Vimu3g01199 3 20459828 20462939 PCT