Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02377 ATGCAGAGTGAGCAACAGAGCAACAACAACAACCAGTTGGTAGTGCAGAATTCGGGGAGCTTGAGCTTCAGCAGCCATTTGTCGAAGGAAGATGAAGAGATGTCAAGGTCTGCTCTTTCCACCTTCAGGGCCAAGGAGGAAGAGATTGAAAGGAAGAAGATGGAGGTCAGAGAAAAGGTTCAGCTTCAGTTGGGTCGCGTTGAGGAAGAAACCAAACGTCTTGCCACCATTCGTGAGGAGCTGGAAGCCCTGGCAGATCCAATGAGGAAAGAAGTTGCACTTGTTCGAAAAAAGATCGATTCCGTAAACAAAGAATTAAAGCCACTGGGTCATGCCTGCCAGAAGAAGGAGAAAGAATACAAAGACGCCCTCGAAGCTTTTAATGAAAAGAACAGGGAAAAAGTACAGCTAATCACCAAGTTAATGGAGTTGGTGAGTGAAAGTGAAAGATTGAGGATGAAGAAGCTGGAGGAGCTGAGCAAGAACGTAGATTCGTTGCAATGA 504 0.4583 MQSEQQSNNNNQLVVQNSGSLSFSSHLSKEDEEMSRSALSTFRAKEEEIERKKMEVREKVQLQLGRVEEETKRLATIREELEALADPMRKEVALVRKKIDSVNKELKPLGHACQKKEKEYKDALEAFNEKNREKVQLITKLMELVSESERLRMKKLEELSKNVDSLQ 167
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02377 167 Pfam Transcriptional activator 16 165 IPR007033 -
Vimu6g02377 167 MobiDBLite consensus disorder prediction 1 42 - -
Vimu6g02377 167 Coils Coil 113 133 - -
Vimu6g02377 167 PANTHER RAB6-INTERACTING PROTEIN GORAB 4 165 IPR007033 -
Vimu6g02377 167 Coils Coil 156 167 - -
Vimu6g02377 167 Coils Coil 39 59 - -
Vimu6g02377 167 MobiDBLite consensus disorder prediction 26 42 - -
Vimu6g02377 167 MobiDBLite consensus disorder prediction 1 25 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02377 Vimu-Chr6 20775475 20777075 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02377 - - gmx:100499923 288.5
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02377 6 20775475 20777075 Vimu3g02660 3 40837872 40839075 ECH
Vimu6g02377 6 20775475 20777075 Vimu6g02377 6 20775475 20777075 ECH
Vimu6g02377 6 20775475 20777075 Vimu5g01777 5 29516532 29518417 ECH