Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01777 ATGGCAACACCAAAACAGTCATACGAGCAAAACCAACAACAAACAAATGTGCAGCGTGTGAGAAATTCAGGGATGATTAACGTCAACCAGAGTCCAATGAGGGATGACAAGGAAGAGGAGATGTCAAGATCAGCTTTGGCAATGTTCAGAGCAAAGGAAGAAGAAATTGAGAGGAAGAAAATGGAGGTGAGGGATAAGGTTCACGCTTATCTGGGTCGAGTAGAGGAGGAAACAAAACGCTTGGCTGAGATTAGAGAAGAGCTTGAGGGTCTGACAGATCCATTGAGGAAGGAAGTTGCAATGGTTAGAAAGAAGATAGACAGTGTGAACAAAGAGCTAAAGCCACTGGGCCAAACCTGCCAGAGAAAGGAAAAAGAATATAAGGAAGCCCTTGATGCTTTCAATGAGAAAAACAAGGAAAAAGCTCAACTTGTTACCAAACTAATGGAGCTGGTGACTGAAAGTGAGAAGTTGAGGATGAAGAAGTTGGAGGAGTTAAGCAAAAACGTAGATACCCTGAACTGA 525 0.4286 MATPKQSYEQNQQQTNVQRVRNSGMINVNQSPMRDDKEEEMSRSALAMFRAKEEEIERKKMEVRDKVHAYLGRVEEETKRLAEIREELEGLTDPLRKEVAMVRKKIDSVNKELKPLGQTCQRKEKEYKEALDAFNEKNKEKAQLVTKLMELVTESEKLRMKKLEELSKNVDTLN 174
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01777 174 Coils Coil 67 87 - -
Vimu5g01777 174 Coils Coil 120 140 - -
Vimu5g01777 174 PANTHER RAB6-INTERACTING PROTEIN GORAB 6 171 IPR007033 -
Vimu5g01777 174 MobiDBLite consensus disorder prediction 1 30 - -
Vimu5g01777 174 MobiDBLite consensus disorder prediction 1 43 - -
Vimu5g01777 174 Pfam Transcriptional activator 21 172 IPR007033 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01777 Vimu-Chr5 29516532 29518417 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01777 - - gmx:100499699 302.753
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01777 5 29516532 29518417 Vimu5g01777 5 29516532 29518417 ECH
Vimu6g02377 6 20775475 20777075 Vimu5g01777 5 29516532 29518417 ECH