Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02028 ATGGGGCTCTCATTCACCAAGCTTTTCAGTCGCTTGTTTGCCAAGAAGGAGATGCGTATACTTATGGTCGGTCTCGACGCCGCCGGTAAGACCACCATTCTCTACAAACTCAAGCTCGGAGAGATCGTCACCACCATTCCCACCATTGGGTTTAATGTGGAAACCGTGGAATATAAGAACATCAGCTTCACTGTTTGGGATGTTGGTGGCCAGGACAAGATCCGTCCTTTGTGGAGACATTACTTCCAAAATACCCAAGGTCTTATATTTGTGGTTGATAGCAATGACCGAGATCGTGTTGTGGAAGCTAGAGACGAGCTGCACAGGATGTTGAATGAGGATGAGTTGAGAGATGCTGTGCTTCTTGTTTTTGCAAACAAGCAAGATCTTCCAAATGCTATGAATGCTGCTGAAATAACTGACAAACTTGGTCTTCATTCTCTCCGTATATCCAGAGCACATGTGCCACATCTGGTGAAGGACTTTACGAAGGACTTGACTGGCTCTCAAACAACATCGCAAACAAGGTTAACGCAGAATAATTATTCTCTGGGATTCAGCAATTCTAAATTTAGTTTGACCGATTTCATATGA 594 0.4411 MGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRISRAHVPHLVKDFTKDLTGSQTTSQTRLTQNNYSLGFSNSKFSLTDFI 197
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02028 197 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 14 146 IPR027417 -
Vimu6g02028 197 SMART arf_sub_2 1 181 - -
Vimu6g02028 197 FunFam ADP-ribosylation factor 1 2 168 - -
Vimu6g02028 197 CDD Arf1_5_like 18 149 IPR045872 GO:0003924
Vimu6g02028 197 Pfam ADP-ribosylation factor family 5 152 IPR006689 GO:0003924|GO:0005525
Vimu6g02028 197 PANTHER ADP RIBOSYLATION FACTOR-RELATED 7 155 IPR024156 GO:0005525
Vimu6g02028 197 NCBIfam small GTP-binding protein domain 16 142 IPR005225 GO:0005525
Vimu6g02028 197 Gene3D - 3 188 IPR027417 -
Vimu6g02028 197 PRINTS GTP-binding SAR1 protein signature 74 99 IPR006689 GO:0003924|GO:0005525
Vimu6g02028 197 PRINTS GTP-binding SAR1 protein signature 47 71 IPR006689 GO:0003924|GO:0005525
Vimu6g02028 197 PRINTS GTP-binding SAR1 protein signature 19 42 IPR006689 GO:0003924|GO:0005525
Vimu6g02028 197 PRINTS GTP-binding SAR1 protein signature 119 140 IPR006689 GO:0003924|GO:0005525
Vimu6g02028 197 SMART rab_sub_5 18 161 - -
Vimu6g02028 197 SMART sar_sub_1 1 197 IPR006689 GO:0003924|GO:0005525
Vimu6g02028 197 ProSiteProfiles small GTPase Arf family profile. 11 197 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02028 Vimu-Chr6 18141022 18143215 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02028 K07937 - pop:7478883 301.982
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02028 6 18141022 18143215 Vimu6g02028 6 18141022 18143215 ECH
Vimu6g02028 6 18141022 18143215 Vimu3g01996 3 34850836 34853025 ECH
Vimu6g02028 6 18141022 18143215 Vimu3g01878 3 33715037 33717537 PCT