Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01878 ATGGATTCAGCACTGTCTGATTCCCAATCGTTGAAAATGGGGCTGTCCTTCACCAAGTTGTTCAGCCGGCTGTTTGCCAAGAAAGAGATGCGTATACTTATGGTCGGTCTCGATGCTGCGGGTAAGACCACCATTCTGTACAAGCTCAAGCTTGGAGAGATTGTAACCACCATTCCCACCATTGGTAAGTTCCATTTGTTCTTTCTACTTCGATCTGTATTGACTGATGCAATGGATTCTACTAATACTTCATTTGACGCAGGGTTTAACGTGGAAACTGTGGAATATAAGAACATCAGCTTCACTGTTTGGGATGTGGGAGGCCAAGACAAGATCCGCCCATTGTGGAGACATTACTTCCAAAATACCCAAGGACTTATCTTTGTGGTTGATAGCAATGACAGGGACCGAGTTGTTGAAGCTAGGGATGAGCTGCATAGAATGCTGAATGAGGATGAGTTGAGAGATGCCGTGCTTCTAGTTTTTGCCAACAAGCAAGATCTTCCAAATGCTATGAATGCTGCGGAGATCACTGATAAGCTTGGCCTTCATTCCCTCCGCCAGCGTCACTGGTATATCCAGAGCACATGCGCCACATCTGGTGAAGGGCTCTATGAAGGACTTGACTGGCTCTCAAACAACATTGCAAACAAGGTTAATACCAAATGA 669 0.4544 MDSALSDSQSLKMGLSFTKLFSRLFAKKEMRILMVGLDAAGKTTILYKLKLGEIVTTIPTIGKFHLFFLLRSVLTDAMDSTNTSFDAGFNVETVEYKNISFTVWDVGGQDKIRPLWRHYFQNTQGLIFVVDSNDRDRVVEARDELHRMLNEDELRDAVLLVFANKQDLPNAMNAAEITDKLGLHSLRQRHWYIQSTCATSGEGLYEGLDWLSNNIANKVNTK 222
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01878 222 PANTHER ADP RIBOSYLATION FACTOR-RELATED 19 214 IPR024156 GO:0005525
Vimu3g01878 222 SMART sar_sub_1 13 215 IPR006689 GO:0003924|GO:0005525
Vimu3g01878 222 CDD Arf1_5_like 30 214 IPR045872 GO:0003924
Vimu3g01878 222 Gene3D - 68 222 IPR027417 -
Vimu3g01878 222 Gene3D - 16 66 IPR027417 -
Vimu3g01878 222 SMART arf_sub_2 13 219 - -
Vimu3g01878 222 Pfam ADP-ribosylation factor family 17 62 IPR006689 GO:0003924|GO:0005525
Vimu3g01878 222 Pfam ADP-ribosylation factor family 82 215 IPR006689 GO:0003924|GO:0005525
Vimu3g01878 222 NCBIfam small GTP-binding protein domain 89 194 IPR005225 GO:0005525
Vimu3g01878 222 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 26 217 IPR027417 -
Vimu3g01878 222 ProSiteProfiles small GTPase Arf family profile. 23 215 - -
Vimu3g01878 222 FunFam ADP-ribosylation factor 1 69 219 - -
Vimu3g01878 222 PRINTS Transforming protein P21 ras signature 92 114 - -
Vimu3g01878 222 PRINTS Transforming protein P21 ras signature 155 168 - -
Vimu3g01878 222 PRINTS Transforming protein P21 ras signature 30 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01878 Vimu-Chr3 33715037 33717537 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01878 K07937 - aew:130791589 357.836
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01429 2 9686679 9687971 Vimu3g01878 3 33715037 33717537 ECH
Vimu3g01878 3 33715037 33717537 Vimu3g01878 3 33715037 33717537 ECH
Vimu6g02028 6 18141022 18143215 Vimu3g01878 3 33715037 33717537 PCT