Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g02023 ATGTTCAGAATGAAGCATTCTCCTATTTCACCACTAGCATTCTCTACATTTTTCCTTACTTTATTTCTTCTGGTCCAAGCCAGGCATCATTCTCATACAAAACACAAGCACTCACATTCTCATAAATCTTCTAAACATTCAAATCCTGCACCTCCTACCCCTCCTCATAATGAGAACAATAACAATTCTTCTGTGGTTTTGGATATACGTACATTTGGAGCAATAGGAGATGGAAAAACAGATGATACAGAGTCATTTAAGATGGCATGGGACGCTGCTTGCCAGAGTGAATCAGCAGTTAATGCTATTCTTGTACCTCAAGGATTCTCTTTCCTCATTCAATCCACTATCTTCACTGGTCCTTGTCAAAGTTTCATGGTGTTGAAGTTTACTGATGGACTTTTCTGGCTCAAATATGTGGATAAGGTTGATGGAACTCTTATGCCACCTGATGGACCCGAATATTGGCCAAAGAACAACAGTAGGCACCAATGGTTGGTGTTTTATAGAATCAATGGAATGTCACTGGAAGGAAGTGGTTTAATAGATGGGAGAGGAGAAAAATGGTGGGACCTCCCATGTAAGCCTCACAAGGGACCTAATGGGACAACACTCCCTGGACCCTGTGATAGCCCAATTGCCATAAGGTTTTTTATGAGTTCCAACTTGACTGTGCATGGACTAAGGATAAAGAACAGCCCCCAGTTCCATTTCAGATTTGATGGCTGCAAAAACGTCCACATAGAATCAATCTACATAACAGCTCCAAAACTTAGCCCCAATACTGATGGAATTCACATAGAAAATACAAATGAAGTGAAAATATACAATTCTGTTATTTCTAATGGTGATGATTGTGTTTCCATTGGATCCGGCTGCAATGATGTCGATATTAAGAACATTACATGTGGACCTGGTCATGGAATTAGCTGTTATCTGTATAACTTATACAGCATTGGTAGTCTGGGGAATCACAACTCTCGAGCCTGTGTTTCAAAGATTGTGGTGAGAGATTCACTCATAAAAATGACAGATAATGGGGTTAGGATCAAGACTTGGCAAGGTGGATCAGGATCAGTGTCTGGAGTGACATTCAACAATATTCATATGGTTAGTGTAAGAAATCCAATCATAATTGACCAATTCTACTGCCTCACCAAGGATTGCACCAACAAGACCTCTGCAGTATCTGTATCAAATATTATTTACACAAACATAAGGGGTACTTATGATATAAGGAGCCCCCCAATGCGTTTTGCTTGCAGTGACTCTGTCCCATGCACCAACTTAACACTCTCAGAAATTGAGCTTCTTCCAGCTGAAGGAGACATAGTGCATGACCCTTTCTGCTGGAATGCATATGGAGATTTGGAGACACTAACCATTCCACCAGTCTCATGCTTGCTCGAGGGCACTCCTCAATCCGTGTCAGACTTTGACATAACTCGTTGCTGA 1455 0.4103 MFRMKHSPISPLAFSTFFLTLFLLVQARHHSHTKHKHSHSHKSSKHSNPAPPTPPHNENNNNSSVVLDIRTFGAIGDGKTDDTESFKMAWDAACQSESAVNAILVPQGFSFLIQSTIFTGPCQSFMVLKFTDGLFWLKYVDKVDGTLMPPDGPEYWPKNNSRHQWLVFYRINGMSLEGSGLIDGRGEKWWDLPCKPHKGPNGTTLPGPCDSPIAIRFFMSSNLTVHGLRIKNSPQFHFRFDGCKNVHIESIYITAPKLSPNTDGIHIENTNEVKIYNSVISNGDDCVSIGSGCNDVDIKNITCGPGHGISCYLYNLYSIGSLGNHNSRACVSKIVVRDSLIKMTDNGVRIKTWQGGSGSVSGVTFNNIHMVSVRNPIIIDQFYCLTKDCTNKTSAVSVSNIIYTNIRGTYDIRSPPMRFACSDSVPCTNLTLSEIELLPAEGDIVHDPFCWNAYGDLETLTIPPVSCLLEGTPQSVSDFDITRC 484
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g02023 484 PANTHER - 65 455 - -
Vimu6g02023 484 MobiDBLite consensus disorder prediction 33 63 - -
Vimu6g02023 484 Gene3D - 52 474 IPR012334 -
Vimu6g02023 484 SMART pbh1 243 269 IPR006626 -
Vimu6g02023 484 SMART pbh1 331 352 IPR006626 -
Vimu6g02023 484 SMART pbh1 360 381 IPR006626 -
Vimu6g02023 484 SMART pbh1 270 291 IPR006626 -
Vimu6g02023 484 Pfam Glycosyl hydrolases family 28 98 437 IPR000743 GO:0004650|GO:0005975
Vimu6g02023 484 SUPERFAMILY Pectin lyase-like 65 475 IPR011050 -
Vimu6g02023 484 FunFam Polygalacturonase At1g48100 family 55 471 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g02023 Vimu-Chr6 18092553 18095114 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g02023 66 484 Glycoside Hydrolase AT1G02460 67.773 0.0 598
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g02023 - - gmx:100778836 802.357
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g02023 6 18092553 18095114 Vimu6g02023 6 18092553 18095114 ECH
Vimu6g02023 6 18092553 18095114 Vimu3g01886 3 33825581 33827391 ECH
Vimu2g01436 2 9747557 9750265 Vimu6g02023 6 18092553 18095114 ECH
Vimu6g02023 6 18092553 18095114 Vimu3g01886 3 33825581 33827391 PCT