Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu2g01436 ATGAGTCTGATTCGATGGTCTTTTATCCTATGGATTACCATGATTCTTTTTGTCCATAGTTGGGATAATGTGGAAGGAAGGTACCACCATCACAAGGGGCAGAAGAAAAGTCCCCCTACACCAGAGGAACCTCCTTCACCTTCACCTCCTTCCATTTCCCCTACTGTTCCCTCTGACCCTTATCCCAGTGATCCTGGGGATTCCCCTTCAAACTGCATTTTCGATGTAAGATCCTTTGGGGCAGTTGGAGACGGTTCAGCTGATGACACACAATCATTCGTGGCAGCATGGAAAGCAGCCTGTGCAGTAGAGTCAGGGGTTGTTCTTGTTCCAGAAAATTACTGTTTCAAGATAACTTCAACTATCTTTACAGGTCCATGCAAGCCTGGACTGGTATTTCAAGTGGATGGTACTCTCATGGCACCTGATGGACCAGAATCTTGGCCTAAGGAAGATAGCCACAGTCAATGGCTTGTGTTCTATCGACTTGATCAAATGACTCTTACTGGGAAAGGAACCATAGAAGGCAATGGGGAGCAGTGGTGGGATCTTCCTTGCAAACCTCACCGGGGTCCCGATGGAAAAACTGTATCAGGACCATGTGATAGCCCTACAATGATACGGTTCTTCATGAGCTCCAATTTGGTGCTGAGTGGGGTAAAGATTCAAAACAGTCCTATGTTCCACGTGAAATTCGATGGTTGCCAAGGAGTACTGATAGACAAGCTGTCAATTTCTTCTCCCAAACTCAGTCCAAATACTGACGGAATACACTTAGGAAACACAAAGGGTGTTGGGATATATAACTCCATGATAAGCAATGGTGACGATTGCATCTCGATTGGACCCGGGTGCTCAGACGTGGACATAGAGGGTGTTACTTGTGCTCCCACGCATGGTATTAGCATTGGAAGCCTCGGAGTGCACAATTCGCAGGCATGTGTCTCAAACTTAACTGTTCGCAACACCATCATAAAGGAATCAGACAATGGCCTGAGGATCAAAACATGGCAAGGTGGAACGGGGTCAGTGAGTGGCCTAAGATTTGAAAACATCCAAATGGAGAATGTGAGAAACTGCATCATCATTGACCAGTACTACTGCTTGTCGAAGGAGTGTCTGAACCAAACTTCAGCAGTGCACGTAAACAATGTGATATATAGAAACATAAAGGGTACTTATGATGTGAGAACTCCTCCTATACACTTTGCTTGCAGTGACAGTGTGGCATGCACCAACATAACACTCTCTGAGATAGAGCTTTTGCCATACGAAGGGGTATTACTAGATGACCCTTTTTGCTGGAATGCTTATGGAACTCAAGAGACCATGACTATACCTCCACTTGATTGCTTAAGAGAAGGTGAACCTGATACAGTTGTGGAGCTCTCTGCCTACGAATGTAGTGCTTAA 1413 0.4544 MSLIRWSFILWITMILFVHSWDNVEGRYHHHKGQKKSPPTPEEPPSPSPPSISPTVPSDPYPSDPGDSPSNCIFDVRSFGAVGDGSADDTQSFVAAWKAACAVESGVVLVPENYCFKITSTIFTGPCKPGLVFQVDGTLMAPDGPESWPKEDSHSQWLVFYRLDQMTLTGKGTIEGNGEQWWDLPCKPHRGPDGKTVSGPCDSPTMIRFFMSSNLVLSGVKIQNSPMFHVKFDGCQGVLIDKLSISSPKLSPNTDGIHLGNTKGVGIYNSMISNGDDCISIGPGCSDVDIEGVTCAPTHGISIGSLGVHNSQACVSNLTVRNTIIKESDNGLRIKTWQGGTGSVSGLRFENIQMENVRNCIIIDQYYCLSKECLNQTSAVHVNNVIYRNIKGTYDVRTPPIHFACSDSVACTNITLSEIELLPYEGVLLDDPFCWNAYGTQETMTIPPLDCLREGEPDTVVELSAYECSA 470
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu2g01436 470 Pfam Glycosyl hydrolases family 28 108 421 IPR000743 GO:0004650|GO:0005975
Vimu2g01436 470 SMART pbh1 315 336 IPR006626 -
Vimu2g01436 470 SMART pbh1 235 261 IPR006626 -
Vimu2g01436 470 SMART pbh1 262 283 IPR006626 -
Vimu2g01436 470 SMART pbh1 344 365 IPR006626 -
Vimu2g01436 470 SMART pbh1 285 305 IPR006626 -
Vimu2g01436 470 SUPERFAMILY Pectin lyase-like 71 467 IPR011050 -
Vimu2g01436 470 MobiDBLite consensus disorder prediction 39 64 - -
Vimu2g01436 470 PANTHER - 72 440 - -
Vimu2g01436 470 FunFam Polygalacturonase At1g48100 family 62 455 - -
Vimu2g01436 470 MobiDBLite consensus disorder prediction 29 67 - -
Vimu2g01436 470 Gene3D - 66 459 IPR012334 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu2g01436 Vimu-Chr2 9747557 9750265 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu2g01436 9 467 Glycoside Hydrolase AT1G48100 71.336 0.0 677
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu2g01436 - - gmx:100785528 890.952
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu2g01436 2 9747557 9750265 Vimu2g01436 2 9747557 9750265 ECH
Vimu2g01436 2 9747557 9750265 Vimu6g02023 6 18092553 18095114 ECH
Vimu2g01436 2 9747557 9750265 Vimu3g01886 3 33825581 33827391 ECH