Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01886 TTGTCTGCACCTTCTAGCCCCCCTGATGAAGCTCCTTGTCCTAGCCCCTCTGTTGATGACAACTACCAGAATACATCTAATAACCTGTTTGATGTTCGAGCATTTGGGGCCGTTGGAGATGGAGTAACTGATGCTACAGAGTCATTCAAGATGGCATGGGACACTGCCTGCCAAAGTGATTCGCCTGTTAAAGTTATCCTCCTTCCCCAAGGTCTCTCCTTCGTCATTCAATCTACTATCTTCACAGGTCCTTGTAAAGGTGACTTAGTACTAAAGGTTGATGGCACTCTTATGCCACCTGATGGACCTGACTCTTGGCCAAAGAACAACAGTAAGCGTCAATGGCTTGTCTTTTATAGAATCAATGGTTTGTCACTTGAAGGAAGTGGTTTAATAGATGGTAGAGGAGCAAAATGGTGGGACCTCCCTTGTAAGCCTCATAAGGGACCCCATGGGACAACATCTCCAGGACCTTGCGACAGCCCTGTTGCTATAAGGTTTTTCATGAGTTCCAACTTGAGTGTACAAGGACTTAAAATCAAGAACAGCCCCCAGTTCCACTTCAGATTCGATGGCTGCGAAAGCGTCCACGTGGAATCAATATACATAACAGCTCCAGCACTCAGCCCCAACACTGATGGAATACATATAGAAAATACCAATGACGTCAAAATATACAATTCGGTCATTTCCAATGGTGATGACTGCGTGTCCATTGGAGCCGGTTGCCATGATGTTGATATAAAGAACATGACATGTGGACCTGGTCATGGTATAAGCATTGGTAGTCTGGGAAATCACAACTCCAGAGCCTGTGTTTCAAACATTACAGTGAGGGACTCGGTTATAAAAGTGTCAGATAACGGGGTTAGGATAAAGACGTGGCAAGGTGGATCAGGATCAGTATCAGGAGTGACATTTAGTAATATTCATATGGAAAGTGTAAGAAACCCCATCATAATTGATCAGTTTTACTGCCTGAGTAAGGATTGCTCGAACAAGACCTCTGCAGTTTTTGTATCGAATATATCTTACACAAACATAAAGGGAACATATGATATAAGGCACCCTCCTATGCATTTTGCTTGCAGTGACTCTGTCCCATGCACCAACTTGACCCTCTCAGATATTGAGCTTCTTCCAGCTGAAGGAGACATTGTGCTTGATCCTTACTGCTGGAGTGCCTATGGAAGCTCTGAGACACTAACCATTCCCCCAGTCTCTTGCTTGCTTGAAGGCCTTCCCCAGTCCATTTCAGGAAATGACGTAGATCATTGCTGA 1281 0.4457 MSAPSSPPDEAPCPSPSVDDNYQNTSNNLFDVRAFGAVGDGVTDATESFKMAWDTACQSDSPVKVILLPQGLSFVIQSTIFTGPCKGDLVLKVDGTLMPPDGPDSWPKNNSKRQWLVFYRINGLSLEGSGLIDGRGAKWWDLPCKPHKGPHGTTSPGPCDSPVAIRFFMSSNLSVQGLKIKNSPQFHFRFDGCESVHVESIYITAPALSPNTDGIHIENTNDVKIYNSVISNGDDCVSIGAGCHDVDIKNMTCGPGHGISIGSLGNHNSRACVSNITVRDSVIKVSDNGVRIKTWQGGSGSVSGVTFSNIHMESVRNPIIIDQFYCLSKDCSNKTSAVFVSNISYTNIKGTYDIRHPPMHFACSDSVPCTNLTLSDIELLPAEGDIVLDPYCWSAYGSSETLTIPPVSCLLEGLPQSISGNDVDHC 426
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01886 426 PANTHER - 28 397 - -
Vimu3g01886 426 MobiDBLite consensus disorder prediction 1 20 - -
Vimu3g01886 426 ProSitePatterns Polygalacturonase active site. 250 263 IPR000743 GO:0004650|GO:0005975
Vimu3g01886 426 FunFam Polygalacturonase At1g48100 family 18 413 - -
Vimu3g01886 426 Pfam Glycosyl hydrolases family 28 64 379 IPR000743 GO:0004650|GO:0005975
Vimu3g01886 426 SUPERFAMILY Pectin lyase-like 27 414 IPR011050 -
Vimu3g01886 426 Gene3D - 16 411 IPR012334 -
Vimu3g01886 426 SMART pbh1 193 219 IPR006626 -
Vimu3g01886 426 SMART pbh1 302 323 IPR006626 -
Vimu3g01886 426 SMART pbh1 243 263 IPR006626 -
Vimu3g01886 426 SMART pbh1 273 294 IPR006626 -
Vimu3g01886 426 SMART pbh1 220 241 IPR006626 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01886 Vimu-Chr3 33825581 33827391 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu3g01886 19 426 Glycoside Hydrolase AT1G02460 71.776 0.0 624
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01886 - - gmx:100792285 820.076
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g01886 3 33825581 33827391 Vimu3g01886 3 33825581 33827391 ECH
Vimu6g02023 6 18092553 18095114 Vimu3g01886 3 33825581 33827391 ECH
Vimu2g01436 2 9747557 9750265 Vimu3g01886 3 33825581 33827391 ECH
Vimu6g02023 6 18092553 18095114 Vimu3g01886 3 33825581 33827391 PCT