Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01919 ATGTATGCTCTTTCTTGGAGCCTCAAGAACATAATTTTCCAGAATTCCAGTGATACCCTTATCCTTCTATACGTCAAGCCCCATCATCATGACACTTTTACCCCCTTGGATTCCACAGGCATAATGGATGATCCTCAAACACCAGGGCATGTGCTTTCTCCGAAAGCAAGCGCAGCAATAAAGAAGTATAGTCAAGATGTGGTCGATTGCGTGTTACAGAAATCGAAGAGAATTTGTAAAGATCTTGAAAACGTAAAGTTGGAGACACAGGTTGAGAGGGGAAACCCAAAGGACGTGATCTGTGAGATGTCTCGGAAGTTGAATGCTGACTTGCTAGTTATGGGTAGCCACGACTATGGAGTTATGAAGAGGGCTTTCTTTGAAAGTGTGAGCGAATACTGCTCCCAGAACGTGAAGTGCCCAGTTCTGATTGTGAAGAAGCCAAAACCACATGCTGGTGCTGGGAACTAA 471 0.4437 MYALSWSLKNIIFQNSSDTLILLYVKPHHHDTFTPLDSTGIMDDPQTPGHVLSPKASAAIKKYSQDVVDCVLQKSKRICKDLENVKLETQVERGNPKDVICEMSRKLNADLLVMGSHDYGVMKRAFFESVSEYCSQNVKCPVLIVKKPKPHAGAGN 156
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01919 156 Gene3D HUPs 1 154 IPR014729 -
Vimu6g01919 156 PRINTS Universal stress protein signature 106 118 IPR006015 -
Vimu6g01919 156 PRINTS Universal stress protein signature 124 146 IPR006015 -
Vimu6g01919 156 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 2 149 - -
Vimu6g01919 156 CDD USP_Like 2 145 - -
Vimu6g01919 156 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 1 147 - -
Vimu6g01919 156 Pfam Universal stress protein family 2 146 IPR006016 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01919 Vimu-Chr6 17293965 17294834 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01919 - - gmx:100804158 236.884
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01919 6 17293965 17294834 Vimu3g01842 3 33168700 33169505 ECH
Vimu6g01919 6 17293965 17294834 Vimu6g01919 6 17293965 17294834 ECH
Vimu6g01919 6 17293965 17294834 Vimu3g02029 3 35196768 35197724 PCT