Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g02029 AGACCATCAAGGCCCACTGTGTTGGAATACCAGAAACCCAAACCTAGAACCGCCAACAGATTCAGATCAACGGCTGACATGGCACAAGAAGAACGGCGGATCCTGGTGGCCGTGGATGAAGGCGAGGAGAGCTTGTACGCCCTCTCATGGTGCCTGAAAAACCTTGTTTTACAAAATTCCCAGGACACCCTTATTCTTCTCTACGTGAAACCCCCTCGCGTCGTTTATTCTACCTTTGATGGGACAGGATATCTGTTTTCCTCCGACGTAACGGCAGCCATGGAGAGGTACGGCCAGGAGGTGGCGGATGTGGTCTTGGAAAAAGCGATGAAACTGTGTAACAATATTGAAAAAGTGGAGACGAGGGTAGAGAATGGCGATCCGAGGGACGTGATTTGTGAAATGGTTCAAAAGTTGGGTGCTGATGTGTTGGTGATGGGAAGCCATGGCTATGGTCTCATCAAGAGGGCTTTCCTTGGAAGTGTTAGTAATCACTGTGCACAGAACGCCAAGTGCCCAGTTTTGATTGTCAAAAAGCCAAAACCAGCTATCGGAAACCAATAA 564 0.4876 RPSRPTVLEYQKPKPRTANRFRSTADMAQEERRILVAVDEGEESLYALSWCLKNLVLQNSQDTLILLYVKPPRVVYSTFDGTGYLFSSDVTAAMERYGQEVADVVLEKAMKLCNNIEKVETRVENGDPRDVICEMVQKLGADVLVMGSHGYGLIKRAFLGSVSNHCAQNAKCPVLIVKKPKPAIGNQ 187
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g02029 187 Pfam Universal stress protein family 32 178 IPR006016 -
Vimu3g02029 187 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 31 179 - -
Vimu3g02029 187 CDD USP_Like 33 177 - -
Vimu3g02029 187 Gene3D HUPs 22 184 IPR014729 -
Vimu3g02029 187 PRINTS Universal stress protein signature 31 49 IPR006015 -
Vimu3g02029 187 PRINTS Universal stress protein signature 138 150 IPR006015 -
Vimu3g02029 187 PRINTS Universal stress protein signature 156 178 IPR006015 -
Vimu3g02029 187 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 32 180 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g02029 Vimu-Chr3 35196768 35197724 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g02029 - - gmx:100305594 284.648
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu3g02029 3 35196768 35197724 Vimu3g02029 3 35196768 35197724 ECH
Vimu6g01919 6 17293965 17294834 Vimu3g02029 3 35196768 35197724 PCT