Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu3g01842 ATGTATGCACTTTCTTGGTGCATCACCAATCTTGTTTCTGATACCAACAAGCTTGTTCTTCTTTATGTCAGGCCACCCTCTGCTTTCTACTCCTTGGATGCTGCAGGGTATATATTTTCCAATGATGTTATTGATGCTATGGAGAAGTACAGTATGCACCTGGTTAATTCAGTGATGGAAAGGGCTGAAGCCACATGTAGAAATTTGAAGGCTACAAATGTGAACATGGAGAGGGTAATTGGGGTAGGAGATGCGAAGGATGTGATATGCAGTGTGGCGAAGAAACTAGAGGCTGATACCTTGGTCATGGGAAGTCATGGCTATGGATTCTTCAAGAGGGCAATCCTTGGAAGTGTTAGTGATCACTGTGCAAAACATGCAGAGTGTCCGGTCGTAATCGTGAAGCACCCGTTGTGTTCCGAAGGTTGGAAATCATGA 438 0.4429 MYALSWCITNLVSDTNKLVLLYVRPPSAFYSLDAAGYIFSNDVIDAMEKYSMHLVNSVMERAEATCRNLKATNVNMERVIGVGDAKDVICSVAKKLEADTLVMGSHGYGFFKRAILGSVSDHCAKHAECPVVIVKHPLCSEGWKS 145
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu3g01842 145 PRINTS Universal stress protein signature 113 135 IPR006015 -
Vimu3g01842 145 PRINTS Universal stress protein signature 95 107 IPR006015 -
Vimu3g01842 145 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 2 137 - -
Vimu3g01842 145 Pfam Universal stress protein family 2 135 IPR006016 -
Vimu3g01842 145 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASES-LIKE SUPERFAMILY PROTEIN 1 136 - -
Vimu3g01842 145 Coils Coil 59 79 - -
Vimu3g01842 145 Gene3D HUPs 1 141 IPR014729 -
Vimu3g01842 145 CDD USP_Like 2 134 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu3g01842 Vimu-Chr3 33168700 33169505 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu3g01842 - - gmx:100306535 248.054
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01919 6 17293965 17294834 Vimu3g01842 3 33168700 33169505 ECH
Vimu3g01842 3 33168700 33169505 Vimu3g01842 3 33168700 33169505 ECH