Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01869 TTTGATCGCTTCAAAGATGAGCTTGCTCTTTTGATCGGTGGATCAGGACTGGATCTAAGGAGCAAAGCAAGGACTCTCCCAGGACCAGTTAGCGACCCTTCAAAGCTGCCTAAGTGGAACTATGATGGCTCCAGCACAGGTCAAGCCCCTGGAGAAGACAGTGAAGTGATTATATATCCACAAGCTATTTTCAAGGATCCATTCAGAAGGGGTAACAATATCTTGGTTATGTGTGATGCTTACACTCCAGCTGGAGAACCCATTCCCACTAACAAGAGGCACAATGCTGCCAAGATATTCAGCCATCCTGATGTTGTTGCCGAAGAGCCCTGGTACGGTATCGAGCAGGAATACACCTTGTTGCAGAAGGATGTCAACTGGCCAGTTGGGTGGCCTGTTGGCGGTTTCCCTGGACCTCAGGGACCTTACTATTGTGGTGCTGGTGCTGATAAGGCTTTTGGGCGTGACATTGTTGACGCACATTACAAAGCCTGTCTTTATGCTGGCATCAACATCAGTGGAATTAATGGAGAGGTTATGCCGGGTCAGTGGGAATTCCAAGTTGGACCTGCGATTGGGATATCAGCTGGTGACGAGTTGTGGGTAGCTCGTTACATCTTGGAGAGGATTACTGAGATTGCTGGTGTGGTGCTTTCCTTTGACCCTAAGCCAATCAAGGGTGATTGGAATGGTGCCGGTGCTCACACCAACTACAGCACGAAGACAATGAGAAACGATGGTGGCTATGAAGTAATCAAATCAGCAATTGAAAAATTGGGGAAGAGGCACAAGGAGCATATCGCTGCTTATGGAGAAGGCAATGAACGCCGTCTGACAGGACGACACGAAACTGCAGACATCAACACCTTCTTATGGGGAGTTGCAAACCGTGGAGCTTCTATTAGGGTTGGGAGGGACACAGAGAAAGCAGGGAAGGGATACTTTGAGGACAGAAGGCCAGCTTCTAACATGGACCCGTATGTTGTTACTTCCATGATTGCAGACACAACCATTCTGTGGAAGCCATGA 1029 0.4849 FDRFKDELALLIGGSGLDLRSKARTLPGPVSDPSKLPKWNYDGSSTGQAPGEDSEVIIYPQAIFKDPFRRGNNILVMCDAYTPAGEPIPTNKRHNAAKIFSHPDVVAEEPWYGIEQEYTLLQKDVNWPVGWPVGGFPGPQGPYYCGAGADKAFGRDIVDAHYKACLYAGINISGINGEVMPGQWEFQVGPAIGISAGDELWVARYILERITEIAGVVLSFDPKPIKGDWNGAGAHTNYSTKTMRNDGGYEVIKSAIEKLGKRHKEHIAAYGEGNERRLTGRHETADINTFLWGVANRGASIRVGRDTEKAGKGYFEDRRPASNMDPYVVTSMIADTTILWKP 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01869 342 FunFam Glutamine synthetase 90 342 - -
Vimu6g01869 342 ProSiteProfiles Glutamine synthetase (GS) beta-grasp domain profile. 4 85 IPR008147 GO:0004356|GO:0006542|GO:0006807
Vimu6g01869 342 ProSitePatterns Glutamine synthetase putative ATP-binding region signature. 223 239 IPR027303 -
Vimu6g01869 342 Pfam Glutamine synthetase, beta-Grasp domain 33 83 IPR008147 GO:0004356|GO:0006542|GO:0006807
Vimu6g01869 342 SUPERFAMILY Glutamine synthetase/guanido kinase 89 337 IPR014746 GO:0003824
Vimu6g01869 342 ProSitePatterns Glutamine synthetase signature 1. 41 58 IPR027302 -
Vimu6g01869 342 Gene3D Glutamine synthetase/guanido kinase, catalytic domain 90 342 - -
Vimu6g01869 342 Pfam Glutamine synthetase, catalytic domain 113 240 IPR008146 GO:0004356|GO:0006807
Vimu6g01869 342 SMART Gln_synt_C_2 89 337 IPR008146 GO:0004356|GO:0006807
Vimu6g01869 342 SUPERFAMILY Glutamine synthetase, N-terminal domain 16 88 IPR036651 GO:0004356|GO:0006542|GO:0006807
Vimu6g01869 342 Gene3D - 9 89 IPR036651 GO:0004356|GO:0006542|GO:0006807
Vimu6g01869 342 PANTHER GLUTAMINE SYNTHETASE 12 340 - -
Vimu6g01869 342 ProSiteProfiles Glutamine synthetase (GS) catalytic domain profile. 92 342 IPR008146 GO:0004356|GO:0006807
Vimu6g01869 342 MobiDBLite consensus disorder prediction 23 51 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01869 Vimu-Chr6 16923178 16925958 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01869 K01915 - zju:107419571 644.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01869 6 16923178 16925958 Vimu1g01126 1 8593030 8597624 PCT
Vimu1g01124 1 8574823 8577741 Vimu6g01869 6 16923178 16925958 PCT