Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01124 ATGTCGTCACTCTCCGATCTTGTTAACCTTAATCTCTCCGACTCCACCGAGAAGGTGATCGCCGAGTACATATGGGTTGGTGGATCTGGCATAGACATAAGGAGCAAAGCAAGGACTCTGTCTGGACCGGTTGAAGACCCTTCGAATCTTCCAAAGTGGAACTACGATGGTTCCAGCACAGGTCAAGCTCCTGGGCAAGATAGTGAAGTTATCTTATACCCACAAACAATTTTCAGGGATCCATTCAGGAGGGGTAACAATATCCTGGTTATGTGTGACGCTTACACTCCTGCTGGGGAACCCATCCCTACCAACAAGAGACATAATGCGGCAAAGATATTTAGCCATCCTGATGTTGTTGCTGAAGAAACCTGGTATGGCATCGAGCAGGAATATACCTTGTTGCAGAAAGATGTTCAGTGGCCTGTTGGATGGCCTCTTGGTGGTTTTCCTGGGGCCCAGGGTCCGTACTATTGTGGTATTGGTGCTAACAAGGCTTTCGGGCGTGATATTGTTGACTCCCATTACAAAGCATGTCTTTATGCTGGCATTAACATAAGTGGAATTAATGGAGAAGTGATGCCTGGTCAGTGGGAATTTCAAGTTGGTCCATCGGTGGGAATCTCTGCAGCTGACGAGTTATGGGTTGCCCGTTACATTTTGGAGAGGATAACTGAGATTGCTGGAGTAGTGCTTTCCTTTGACCCTAAACCAATTCAGGGTGATTGGAATGGTGCTGGTGCTCACACGAATTACAGTACCAAGTCCATGAGAAACGATGGTGGCTACGAAGTCATAAAAAAAGCAATCAGCAAGTTGGAAAAGAGGCACAAGGAGCACATTGCTGCTTATGGAGAAGGCAATGAACGTCGTTTGACAGGAAAACACGAGACAGCGGACATGAACACCTTCATATGGGGTGTTGCGAACCGTGGTGCTTCAATTAGGGTAGGAAGGGACACAGAGAAGAAAGGGAAGGGATACTTTGAGGATAGAAGGCCTGCATCTAACATGGACCCTTACGTCGTCACTTCCATGATTGCTGAGACAACCATTCTTTGGAAACCATAA 1071 0.4687 MSSLSDLVNLNLSDSTEKVIAEYIWVGGSGIDIRSKARTLSGPVEDPSNLPKWNYDGSSTGQAPGQDSEVILYPQTIFRDPFRRGNNILVMCDAYTPAGEPIPTNKRHNAAKIFSHPDVVAEETWYGIEQEYTLLQKDVQWPVGWPLGGFPGAQGPYYCGIGANKAFGRDIVDSHYKACLYAGINISGINGEVMPGQWEFQVGPSVGISAADELWVARYILERITEIAGVVLSFDPKPIQGDWNGAGAHTNYSTKSMRNDGGYEVIKKAISKLEKRHKEHIAAYGEGNERRLTGKHETADMNTFIWGVANRGASIRVGRDTEKKGKGYFEDRRPASNMDPYVVTSMIAETTILWKP 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01124 356 PANTHER GLUTAMINE SYNTHETASE 4 354 - -
Vimu1g01124 356 Gene3D - 1 103 IPR036651 GO:0004356|GO:0006542|GO:0006807
Vimu1g01124 356 ProSitePatterns Glutamine synthetase putative ATP-binding region signature. 237 253 IPR027303 -
Vimu1g01124 356 SUPERFAMILY Glutamine synthetase/guanido kinase 103 352 IPR014746 GO:0003824
Vimu1g01124 356 ProSitePatterns Glutamine synthetase signature 1. 55 72 IPR027302 -
Vimu1g01124 356 Pfam Glutamine synthetase, catalytic domain 168 346 IPR008146 GO:0004356|GO:0006807
Vimu1g01124 356 ProSiteProfiles Glutamine synthetase (GS) beta-grasp domain profile. 19 99 IPR008147 GO:0004356|GO:0006542|GO:0006807
Vimu1g01124 356 Gene3D Glutamine synthetase/guanido kinase, catalytic domain 104 356 - -
Vimu1g01124 356 SMART Gln_synt_C_2 103 351 IPR008146 GO:0004356|GO:0006807
Vimu1g01124 356 FunFam Glutamine synthetase, chloroplastic 1 103 - -
Vimu1g01124 356 FunFam Glutamine synthetase 104 356 - -
Vimu1g01124 356 Pfam Glutamine synthetase, beta-Grasp domain 21 97 IPR008147 GO:0004356|GO:0006542|GO:0006807
Vimu1g01124 356 ProSiteProfiles Glutamine synthetase (GS) catalytic domain profile. 106 356 IPR008146 GO:0004356|GO:0006807
Vimu1g01124 356 SUPERFAMILY Glutamine synthetase, N-terminal domain 14 102 IPR036651 GO:0004356|GO:0006542|GO:0006807
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01124 Vimu-Chr1 8574823 8577741 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01124 K01915 - gmx:547798 699.893
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01124 1 8574823 8577741 Vimu1g01124 1 8574823 8577741 ECH
Vimu1g01124 1 8574823 8577741 Vimu6g01869 6 16923178 16925958 PCT