Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01126 ATGTCGTTACTCTCCGATCTGATCAACCTTAACCTCTCCAACACTACTGAGAAGGTGATCGCGGAATACATATGGGTTGGTGGATCTGGTATGGACATGAGGAGTAAGGCACGGACTCTTTCAGGTCCGGTTAATGATCCTTCCGAGCTTCCCAAATGGACCTATGATGGTTCCAGCACTGGTCAAGCTCCTGGAGCAGACAGTGAAGTGCTGTTATATCCACAAGCAATTTTCAAGGATCCATTCAGGAGGGGTGAAAATATTCTGGTTATGTGTGATACTTACACTGCTGCGGGAGAACCCATTCCTACCAACACGAGATATAATGCGGCAAAGATATTTAGCCATCCTGATGTTGTTGCTGAAGAACCCTGGTATGGCATTGAGCAAGAATACACCTTGTTGCAGAAAGATGTCCAATGGCCCCTCGGATGGCCTATTGGTGGTTTTCCTGGACCCCAGGGACCCTACTATTGTGGTGTTGGAGCAAACAGAGCTTTCGGACGGGACATTGTGAACTCTCATTTCAAAGCCTGTCTTTATGCAGGCATTAATATTACTGGAATTAATGGAGAAGTGATGCCCGGTCAGTGGGAATTCCAAATTGGTCCATCGGCTGGCATATCTGCGTGTGACGACTTGTGGGTTGCTCGCTACATTTTGGAGAGGATCACCGAGATTGCTGGGGTGGTGCTTTCTTTTGATCCTCAACCGATTAAGGGTGATTGGAATTGTGCTGGCGCTCACACGAATTTCAGTACCAAGTCCATGAGAAACGATGGTGGCTATGAAGTCATCAAAAAAGCAATCAGTAAGTTGGAAAAGAGGCACAAGGAGCACATAGCCGCTTATGGAGAAGGCAATGAACGTCGTTTAACAGGAAAACACGAGACAGCCAACATAAACACCTTCATATGGGGTGTTGCAAACCGTGGTGCTTCAATTAGGGTAGGGAGGGACACAGAGAGGAAAGGGAAAGGATACTTTGAAGATAGAAGGCCTGCATCTAACATGGACCCTTATGTCGTCACTTCCATGATTGCTCAGACAACCATTCTTTGGAAACCATGA 1071 0.4669 MSLLSDLINLNLSNTTEKVIAEYIWVGGSGMDMRSKARTLSGPVNDPSELPKWTYDGSSTGQAPGADSEVLLYPQAIFKDPFRRGENILVMCDTYTAAGEPIPTNTRYNAAKIFSHPDVVAEEPWYGIEQEYTLLQKDVQWPLGWPIGGFPGPQGPYYCGVGANRAFGRDIVNSHFKACLYAGINITGINGEVMPGQWEFQIGPSAGISACDDLWVARYILERITEIAGVVLSFDPQPIKGDWNCAGAHTNFSTKSMRNDGGYEVIKKAISKLEKRHKEHIAAYGEGNERRLTGKHETANINTFIWGVANRGASIRVGRDTERKGKGYFEDRRPASNMDPYVVTSMIAQTTILWKP 356
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01126 356 SMART Gln_synt_C_2 103 351 IPR008146 GO:0004356|GO:0006807
Vimu1g01126 356 FunFam Glutamine synthetase 104 356 - -
Vimu1g01126 356 SUPERFAMILY Glutamine synthetase/guanido kinase 103 352 IPR014746 GO:0003824
Vimu1g01126 356 Gene3D - 1 103 IPR036651 GO:0004356|GO:0006542|GO:0006807
Vimu1g01126 356 Gene3D Glutamine synthetase/guanido kinase, catalytic domain 104 356 - -
Vimu1g01126 356 SUPERFAMILY Glutamine synthetase, N-terminal domain 16 102 IPR036651 GO:0004356|GO:0006542|GO:0006807
Vimu1g01126 356 PANTHER GLUTAMINE SYNTHETASE 3 354 - -
Vimu1g01126 356 Pfam Glutamine synthetase, catalytic domain 168 346 IPR008146 GO:0004356|GO:0006807
Vimu1g01126 356 ProSitePatterns Glutamine synthetase signature 1. 55 72 IPR027302 -
Vimu1g01126 356 FunFam Glutamine synthetase, chloroplastic 1 103 - -
Vimu1g01126 356 Pfam Glutamine synthetase, beta-Grasp domain 21 96 IPR008147 GO:0004356|GO:0006542|GO:0006807
Vimu1g01126 356 ProSiteProfiles Glutamine synthetase (GS) beta-grasp domain profile. 19 99 IPR008147 GO:0004356|GO:0006542|GO:0006807
Vimu1g01126 356 ProSiteProfiles Glutamine synthetase (GS) catalytic domain profile. 106 356 IPR008146 GO:0004356|GO:0006807
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01126 Vimu-Chr1 8593030 8597624 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01126 K01915 - gmx:547798 673.315
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01869 6 16923178 16925958 Vimu1g01126 1 8593030 8597624 PCT