Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g01718 ATGTCCAAACAGACTTACAGCTTTTGCTTCTGCTTCCGCCGCCGCTTCAGTCTCCCCGTGTCGGAGGCCCCTCCGGAGATAAGGACCCTTTTCAACCGTTATTCCGATGAGAATGGAATCATGACAGCCTCTCACGTCCGTAGTTTCCTGGTTGAGGTGCAGAAAGAGGAGAGTGCCACTGAGGAGGAAGCACAGGCCATCATCGATGGCCACAAGCATCTCAGCATCTTTCACAGGAGGGGTCTCAATCTTGAGAGTTTCTTCAACTACCTCTTCAGTAGCAATAATAATCCACCTCTCTCGCCTTCTCTTGGGGTGCACCAAGATATGTCTTCCCCGTTGTTTCATTACTTCATTTATACTGGTCATAATTCCTATCTAACCGGGAACCAACTTAGCAGTGACTGCAGTGACGTCCCCATCATCAAGGCACTGCAGAAGGGTGTAAGGGTGATTGAACTAGATATATGGCCTAATGAATCAAAGGATGATGTGGATGTTCTTCATGGAAGGACATTGACATCTCCTGTGGCACTCATCAAATGTTTGAGGTCTATTAAGCAGTATGCTTTTGTTGCGTCAGAATATCCAGTTGTAATAACCTTAGAAGACCACCTTACTCCCGATCTTCAGGCCAAAGTGGCTAAGATGGTTACTCAAACATTTGGAGACATACTATTTTCTCCTGGCTCTGAAAGCTTGAAGGAATTTCCTTCTCCTAAATCGCTTAAAAGGAGGATTATCATATCAACCAAACCACCTAAGGAATACATTGAGGCAAAAGAAGTTCAGGAAAAGGGGGAGGGATCACAAAAGGAAAAGCCTGTAGATGATGAAGAAGCATGGGGGAAAGAAGTTCCTAGTTTGAGAGGTGGCACTATTTCTGATCACAAGAACTTCGAGGATGAGGATGATCTTGACAATGAAGATGATACTGATGAAGCAGAATATTCACGTCAAAATGCATCAGACGAATACAGACGTTTAATTGCCATTCATGCTGGGAAGCCTAAAGGTGGATTAACGGAATGCCTCAAAGTGGATCCCGATACAGTGAAACGTCTAAGTTTAAGTGAGCTACAACTTGAAAAGGCTGCTGAAACTCATGGCAAAGAAATCATAAGGTTTACTCAGCGGAATATACTGAGAGTGTATCCAAAAGGCACTCGTATTGCCTCGACAAATTATAACCCATTGATCGGGTGGATGCATGGAGCCCAGATGGTTGCATTCAACATGCAGGGAATGTTCAAAGCCAATGGGGGATGTGGCTATGTTAAGAAACCAGATTTTCTGTTAAAGACTGGTCCTGATAATGAGGTCTTCGATCCTAAAGCTCGTTTGCCGGTGAAGAAAACTTTGAAAGTAAAAGCTCTACTGCCAGGAGAATTGAATGATGTTCCTTTGTCTGTGTCTGTGGGGATTGCTGGAGTCCCTTATGATACTGTTATGAAAAAAACAAAGAGCGTGGAGGATAATTGGTCTCCATCATGGAATGAGGTATTTGAGTTTCCACTTTCTGTTCCAGAACTGGCTCTGCTTCGTGTAGAAGTCCATGAGTATGACATGTCTGAGAAAGATGACTTTGGTGGCCAAACTTGCTTACCTGTGTGGGAACTGAGAAGTGGAATTCGTGCAGTTCCATTATATTCCCGCAAAGGAGAAAAGTACAACAATGTGAAGCTTCTAATTCGCTTTGAATTCATTTGA 1710 0.4368 MSKQTYSFCFCFRRRFSLPVSEAPPEIRTLFNRYSDENGIMTASHVRSFLVEVQKEESATEEEAQAIIDGHKHLSIFHRRGLNLESFFNYLFSSNNNPPLSPSLGVHQDMSSPLFHYFIYTGHNSYLTGNQLSSDCSDVPIIKALQKGVRVIELDIWPNESKDDVDVLHGRTLTSPVALIKCLRSIKQYAFVASEYPVVITLEDHLTPDLQAKVAKMVTQTFGDILFSPGSESLKEFPSPKSLKRRIIISTKPPKEYIEAKEVQEKGEGSQKEKPVDDEEAWGKEVPSLRGGTISDHKNFEDEDDLDNEDDTDEAEYSRQNASDEYRRLIAIHAGKPKGGLTECLKVDPDTVKRLSLSELQLEKAAETHGKEIIRFTQRNILRVYPKGTRIASTNYNPLIGWMHGAQMVAFNMQGMFKANGGCGYVKKPDFLLKTGPDNEVFDPKARLPVKKTLKVKALLPGELNDVPLSVSVGIAGVPYDTVMKKTKSVEDNWSPSWNEVFEFPLSVPELALLRVEVHEYDMSEKDDFGGQTCLPVWELRSGIRAVPLYSRKGEKYNNVKLLIRFEFI 569
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g01718 569 ProSiteProfiles C2 domain profile. 427 551 IPR000008 -
Vimu6g01718 569 SMART plcx_3 108 252 IPR000909 -
Vimu6g01718 569 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 354 431 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vimu6g01718 569 Gene3D C2 domain 450 569 IPR035892 -
Vimu6g01718 569 MobiDBLite consensus disorder prediction 258 285 - -
Vimu6g01718 569 Pfam Phosphoinositide-specific phospholipase C, efhand-like 26 95 IPR015359 -
Vimu6g01718 569 Gene3D Phosphatidylinositol (PI) phosphodiesterase 105 446 IPR017946 GO:0006629|GO:0008081
Vimu6g01718 569 SUPERFAMILY PLC-like phosphodiesterases 108 434 IPR017946 GO:0006629|GO:0008081
Vimu6g01718 569 CDD C2_PLC_like 471 568 - -
Vimu6g01718 569 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 356 432 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vimu6g01718 569 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 468 568 IPR035892 -
Vimu6g01718 569 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 10 568 IPR001192 GO:0035556
Vimu6g01718 569 Pfam Phosphatidylinositol-specific phospholipase C, X domain 110 252 IPR000909 -
Vimu6g01718 569 PRINTS Phospholipase C signature 113 131 IPR001192 GO:0035556
Vimu6g01718 569 PRINTS Phospholipase C signature 139 159 IPR001192 GO:0035556
Vimu6g01718 569 PRINTS Phospholipase C signature 381 402 IPR001192 GO:0035556
Vimu6g01718 569 PRINTS Phospholipase C signature 535 545 IPR001192 GO:0035556
Vimu6g01718 569 PRINTS Phospholipase C signature 236 253 IPR001192 GO:0035556
Vimu6g01718 569 PRINTS Phospholipase C signature 402 420 IPR001192 GO:0035556
Vimu6g01718 569 Pfam C2 domain 475 543 IPR000008 -
Vimu6g01718 569 Gene3D - 22 98 - -
Vimu6g01718 569 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 108 252 - -
Vimu6g01718 569 MobiDBLite consensus disorder prediction 258 320 - -
Vimu6g01718 569 SMART plcy_3 326 433 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vimu6g01718 569 SUPERFAMILY EF-hand 23 110 IPR011992 -
Vimu6g01718 569 SMART C2_3c 453 549 IPR000008 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g01718 Vimu-Chr6 15707866 15711991 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g01718 1 569 Acyl Lipid Metabolism Gene Families AT3G08510 65.862 0.0 760
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g01718 K05857 - gmx:100784534 949.503
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01718 6 15707866 15711991 Vimu1g00909 1 6340624 6345448 ECH
Vimu1g01509 1 13458249 13458981 Vimu6g01718 6 15707866 15711991 ECH
Vimu6g01718 6 15707866 15711991 Vimu6g01718 6 15707866 15711991 ECH
Vimu6g01718 6 15707866 15711991 Vimu1g00909 1 6340624 6345448 PCT