Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g01509 ATGGCCACCACAACTAGACACCCTTCTCATAGAACCTCTAAACAGCACTTCAAAGTCTGTTTCTGTTTCAGGAGAATGTTTAGGCTCAAAGTGGTTGAACCCCCTGACGAAATCAACACTGTTTTTGAAGAGTATTCACATGATGGCATCATGAGCATGGATGATATGTGCAATTTCTTAGTTGAATTTCAGGGAGAAAATGAAGCTGTCACCACACATGCTCAAGCCATTTTTGACAGCCTCAAGCATCTCAACATATTTCAAAGGAGAGGCTTTCATATTGATGCCTTCTTCCGTTATCTCTTGAGTGACCTTAATGGCCCCCTTGCTGAGGTGCACCATGACATGAATGCTCCTTTGGCTCATTATTTCTTGTACACAGGCCACAACTCCTACTTAACTGGAAATCAACTTAGCAGTGCCAGCAGTACTTCTGCGATAATAAAAGCATTGAAGAAAGGAGTTAGAGTAATTGAGCTAGATTTATGGCCAAATTCCAGAGGAGACGATGTGTTAGTTCATCATGGAGGGTATGAATTTATATAG 546 0.4139 MATTTRHPSHRTSKQHFKVCFCFRRMFRLKVVEPPDEINTVFEEYSHDGIMSMDDMCNFLVEFQGENEAVTTHAQAIFDSLKHLNIFQRRGFHIDAFFRYLLSDLNGPLAEVHHDMNAPLAHYFLYTGHNSYLTGNQLSSASSTSAIIKALKKGVRVIELDLWPNSRGDDVLVHHGGYEFI 181
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g01509 181 Pfam Phosphatidylinositol-specific phospholipase C, X domain 116 177 IPR000909 -
Vimu1g01509 181 PRINTS Phospholipase C signature 119 137 IPR001192 GO:0035556
Vimu1g01509 181 PRINTS Phospholipase C signature 145 165 IPR001192 GO:0035556
Vimu1g01509 181 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 114 176 - -
Vimu1g01509 181 SMART plcx_3 114 180 IPR000909 -
Vimu1g01509 181 Pfam Phosphoinositide-specific phospholipase C, efhand-like 36 104 IPR015359 -
Vimu1g01509 181 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 14 176 IPR001192 GO:0035556
Vimu1g01509 181 Gene3D Phosphatidylinositol (PI) phosphodiesterase 113 180 IPR017946 GO:0006629|GO:0008081
Vimu1g01509 181 SUPERFAMILY EF-hand 25 113 IPR011992 -
Vimu1g01509 181 SUPERFAMILY PLC-like phosphodiesterases 114 177 IPR017946 GO:0006629|GO:0008081
Vimu1g01509 181 Gene3D - 30 112 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g01509 Vimu-Chr1 13458249 13458981 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g01509 14 177 EF-hand Containing Proteins AT5G58670 57.485 1.57e-63 203
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g01509 K05857 - gmx:100817915 305.064
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu1g01509 1 13458249 13458981 Vimu1g01509 1 13458249 13458981 ECH
Vimu1g01509 1 13458249 13458981 Vimu6g01718 6 15707866 15711991 ECH
Vimu1g01509 1 13458249 13458981 Vimu1g00909 1 6340624 6345448 ECH