Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu1g00909 TTGAAGAACGCTTCACTTAAAAATCTCTTTTTTCCAACACTGTCAGAACACAAGAAGAAGGTTGAAGTGAACTCGGAATCCACACGCACAAATTCACACTCTCTCGCATATATTTGCGTGGGTAGTGAAAGAGAACAGAGAAGAGAAAGGGAGCAAGTGATGTCGAAGCAGACATACAGCGTGTGCTTCTGCTGGCGCCGGCGGTTTAAGCTCGCCCTGGCGGAGGCGCCGTCGGAGATCAAGACCCTCTTCGAGCAGTACTCTGAGAATGAGATCATGACACCTTCGCATCTGAAAAGGTTCCTTGTTGAAGTGCAAAAGCAAGAGAAGGCCACTGAAGAAGAGGCGCAAGCCATCATCGACAGCTTCAGGCATTTCCATCGCAGAGGGGTTGGCCTCAATCTCGAATCTTTCTTCAAGTACCTCTTCAGTGATGACAACCCCCCTCTTCTTCCTTCTCATGGGGTGTACCATGATATGACTTTACCCTTGTCACATTATTTCATATATACTGGCCATAATTCCTATTTAACTGGGAATCAGCTGAGCAGCGAATGCAGTGACGTGCCCATCATAAATGCACTGAAGAGAGGTGTGAGGGTGATTGAATTAGACATATGGCCTAATGCAGCAAAGGATGATATAAATGTTCTTCATGGAAATACATTGACTCCTCCTGTAGAGCTCATCAGATGTTTGAGATCTATTAAGGAATATGCCTTTGTGGCATCAGAATATCCGGTTGTAATAACCCTGGAAGACCACCTCACACCGGATCTTCAGGCTAAAGTGGCTGAGATGGTTGCAAACACTTTTGGAGATATACTATTTACTCCTAACACCGAAAGCGTGAAGGAGTTCCCTTCTCCTGATTCTCTTAAAAGGAGGATTATTATATCAACAAAACCACCTAAGGAGTATCTTGGGGCAAAAGAAAAGGATAAAGGGGATGATTCACAGCATGAAAAGGGAAAGGAGGATGGAAAGGCTTCGGGAGAGGATGAAGCTTGGGGAAAGGAAGTCCCTAGCTTGAGAGGTGGTACTATAGAGGATTACAAGGACAACAACGTGGATGAAGAAGATCTTAATGATGACGACGAATCTGATGAATCAGATAAGTTACCGCATAATGTAGCTCCAGAATATAGACGCCTAATTGCCATTCATGCTGGGAAGCCTAAAGGTGGATTGGAGGAATGCCTCAAAGTGGATCCTGATAAAGTGAGACGTCTAAGTTTAAGTGAGCAACAGCTTGAAAAGGCTGCTATAAATCATGGAAAGCAAATTGTAAGACGGCGACCCCACATAGGATCCTGTGCTTGGGGGTTTACTCAGCGCAATATTTTGAGGGTGTATCCCAAAGGTACTCGCATTGACTCATCAAATTATAACCCATTAATTGGGTGGATGCATGGAGCTCAGATGGTTGCATTTAACATGCAGGGATATGGTAGATCGCTTTGGTTGATGCATGGAATGTTCAGAGCCAATGGAGGGTGTGGTTATGTTAAGAAACCAGATTTTCTGTTAGAGACTGGTCCAGACAATGAGGTCTTCGATCCTAAAGCCAAATTACCTGTGAAGACTACTTTGAAGGTGACTGTATATATGGGGGAAGGATGGTATTATGATTTCAAACATACACACTTTGATCAATACTCCCCTCCTGACTTCTATACAAGAGTGGGGATTGCTGGAGTCCCTAGTGATACTGTAATGAAGAAAACTAAGGCAATAGAGGATAATTGGTTACCTACATGGAATGAGACATTTGAGTTCCCTCTTTCTGTTCCAGAGTTGGCCTTGCTTCGCATAGAAGTTCATGAGTATGACATGTCTGAGAAAGATGACTTTGGTGGACAAACATGCCTACCTATCCGGGAGCTAAGAAGTGGCATTCGAGCAATTCCACTGAATAGCCAAAAGGGAGAGAAATACCCCTCTGTAAAGCTTCTCATGCGCTTTGAGTTTATTAATTGA 1980 0.4384 MKNASLKNLFFPTLSEHKKKVEVNSESTRTNSHSLAYICVGSEREQRREREQVMSKQTYSVCFCWRRRFKLALAEAPSEIKTLFEQYSENEIMTPSHLKRFLVEVQKQEKATEEEAQAIIDSFRHFHRRGVGLNLESFFKYLFSDDNPPLLPSHGVYHDMTLPLSHYFIYTGHNSYLTGNQLSSECSDVPIINALKRGVRVIELDIWPNAAKDDINVLHGNTLTPPVELIRCLRSIKEYAFVASEYPVVITLEDHLTPDLQAKVAEMVANTFGDILFTPNTESVKEFPSPDSLKRRIIISTKPPKEYLGAKEKDKGDDSQHEKGKEDGKASGEDEAWGKEVPSLRGGTIEDYKDNNVDEEDLNDDDESDESDKLPHNVAPEYRRLIAIHAGKPKGGLEECLKVDPDKVRRLSLSEQQLEKAAINHGKQIVRRRPHIGSCAWGFTQRNILRVYPKGTRIDSSNYNPLIGWMHGAQMVAFNMQGYGRSLWLMHGMFRANGGCGYVKKPDFLLETGPDNEVFDPKAKLPVKTTLKVTVYMGEGWYYDFKHTHFDQYSPPDFYTRVGIAGVPSDTVMKKTKAIEDNWLPTWNETFEFPLSVPELALLRIEVHEYDMSEKDDFGGQTCLPIRELRSGIRAIPLNSQKGEKYPSVKLLMRFEFIN 659
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu1g00909 659 ProSiteProfiles C2 domain profile. 511 640 IPR000008 -
Vimu1g00909 659 SUPERFAMILY PLC-like phosphodiesterases 158 511 IPR017946 GO:0006629|GO:0008081
Vimu1g00909 659 MobiDBLite consensus disorder prediction 306 375 - -
Vimu1g00909 659 FunFam Phosphoinositide phospholipase C 74 153 - -
Vimu1g00909 659 Pfam Phosphatidylinositol-specific phospholipase C, Y domain 441 508 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vimu1g00909 659 Pfam Phosphoinositide-specific phospholipase C, efhand-like 78 146 IPR015359 -
Vimu1g00909 659 Gene3D - 74 154 - -
Vimu1g00909 659 SMART plcx_3 158 302 IPR000909 -
Vimu1g00909 659 Gene3D C2 domain 525 659 IPR035892 -
Vimu1g00909 659 Pfam Phosphatidylinositol-specific phospholipase C, X domain 160 302 IPR000909 -
Vimu1g00909 659 SUPERFAMILY C2 domain (Calcium/lipid-binding domain, CaLB) 530 658 IPR035892 -
Vimu1g00909 659 Pfam C2 domain 531 632 IPR000008 -
Vimu1g00909 659 PRINTS Phospholipase C signature 189 209 IPR001192 GO:0035556
Vimu1g00909 659 PRINTS Phospholipase C signature 448 469 IPR001192 GO:0035556
Vimu1g00909 659 PRINTS Phospholipase C signature 469 487 IPR001192 GO:0035556
Vimu1g00909 659 PRINTS Phospholipase C signature 624 634 IPR001192 GO:0035556
Vimu1g00909 659 PRINTS Phospholipase C signature 163 181 IPR001192 GO:0035556
Vimu1g00909 659 PRINTS Phospholipase C signature 286 303 IPR001192 GO:0035556
Vimu1g00909 659 PANTHER PHOSPHOINOSITIDE-SPECIFIC PHOSPHOLIPASE C FAMILY PROTEIN 38 657 IPR001192 GO:0035556
Vimu1g00909 659 SMART plcy_3 382 510 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vimu1g00909 659 Gene3D Phosphatidylinositol (PI) phosphodiesterase 155 523 IPR017946 GO:0006629|GO:0008081
Vimu1g00909 659 SMART C2_3c 530 638 IPR000008 -
Vimu1g00909 659 CDD C2_PLC_like 528 657 - -
Vimu1g00909 659 SUPERFAMILY EF-hand 68 160 IPR011992 -
Vimu1g00909 659 ProSiteProfiles Phosphatidylinositol-specific phospholipase X-box domain profile. 158 302 - -
Vimu1g00909 659 MobiDBLite consensus disorder prediction 306 340 - -
Vimu1g00909 659 ProSiteProfiles Phosphatidylinositol-specific phospholipase Y-box domain profile. 412 509 IPR001711 GO:0004435|GO:0006629|GO:0007165|GO:0035556
Vimu1g00909 659 MobiDBLite consensus disorder prediction 354 368 - -
Vimu1g00909 659 FunFam Phosphoinositide phospholipase C 525 658 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu1g00909 Vimu-Chr1 6340624 6345448 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu1g00909 54 658 Acyl Lipid Metabolism Gene Families AT3G55940 66.016 0.0 807
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu1g00909 K05857 - gmx:100037460 1071.61
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g01718 6 15707866 15711991 Vimu1g00909 1 6340624 6345448 ECH
Vimu1g01509 1 13458249 13458981 Vimu1g00909 1 6340624 6345448 ECH
Vimu1g00909 1 6340624 6345448 Vimu1g00909 1 6340624 6345448 ECH
Vimu6g01718 6 15707866 15711991 Vimu1g00909 1 6340624 6345448 PCT