Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu6g00461 ATGGCAGCAGCAACAAGGTACGCAGTTGTCACAGGAGCAAACAAAGGGATAGGATTTGGGATTTGCAAGCAATTGGTTTCTAATGGTGTCACTGTGGTGCTAACAGCAAGGGATGAAAAAAGGGGTACTGAAGCTGTTGAAAAACTGAAGGAGTTTGGTGTGTCTGACCAAGTGGTGTTTCATCAGCTTGATGTGACTGACCCTAAAAGCATTGAATCCCTTGCAAATTTCATCAAATCCCATTTTGGGAAACTTGATATCCTGGTGAATAATGCAGGAATAAGTGGAACTAATGTTGACCATGATGCTTTAGCTGCTGCACGGGAAAAAGTTGACAGTGTTAATTGGAGAAAATTTGCATATGAAACTTATGAATCTACAGAAGCAAGCATTAGAACAAATTACTATGGAGCCAAATTAATGTGTGAAGCATTTATTCCCCTTCTAGAATTGTCAGACTCACCAAGGATTGTTAATGTTTCCTCCACCTACGGGAAGTTGGAGAGAATACAAAATGAATGGGCTAGAGGAATCCTAAGTGATGTTGAAAGCTTAACAGAAGAAAAAGTGGATGAAGTTCTGAAAAAGTTTCTAGATGATTTTAAAGAGGGTTCATTACAAACCAATGGGTGGCCACCTGAGCTTTCTGCATATACAGTCTCAAAAGCTGCTATGACTGCCTACACAAGGGTTCTTGCCAAGAAGTACCCATCTTTCTGCATCAATGCTGTTTGCCCTGGCTTTGTGAAAACAGATCTCAACTTCAATATTGGCTATCTTGGAGTTGATGAAGGGGCTGAAAGTGTAGTAAGGTTGGCTCTACTACCTAATGGAGGTCCTTCTGGTCTCTTCTTTTCTCGAAGTGAAGTTGCATCAGTTTGA 882 0.4082 MAAATRYAVVTGANKGIGFGICKQLVSNGVTVVLTARDEKRGTEAVEKLKEFGVSDQVVFHQLDVTDPKSIESLANFIKSHFGKLDILVNNAGISGTNVDHDALAAAREKVDSVNWRKFAYETYESTEASIRTNYYGAKLMCEAFIPLLELSDSPRIVNVSSTYGKLERIQNEWARGILSDVESLTEEKVDEVLKKFLDDFKEGSLQTNGWPPELSAYTVSKAAMTAYTRVLAKKYPSFCINAVCPGFVKTDLNFNIGYLGVDEGAESVVRLALLPNGGPSGLFFSRSEVASV 293
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu6g00461 293 PRINTS Glucose/ribitol dehydrogenase family signature 7 24 IPR002347 -
Vimu6g00461 293 PRINTS Glucose/ribitol dehydrogenase family signature 83 94 IPR002347 -
Vimu6g00461 293 PRINTS Glucose/ribitol dehydrogenase family signature 237 254 IPR002347 -
Vimu6g00461 293 PRINTS Glucose/ribitol dehydrogenase family signature 280 293 IPR002347 -
Vimu6g00461 293 PRINTS Glucose/ribitol dehydrogenase family signature 149 165 IPR002347 -
Vimu6g00461 293 PRINTS Glucose/ribitol dehydrogenase family signature 218 237 IPR002347 -
Vimu6g00461 293 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 218 237 IPR002347 -
Vimu6g00461 293 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 83 94 IPR002347 -
Vimu6g00461 293 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 163 IPR002347 -
Vimu6g00461 293 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 6 278 IPR036291 -
Vimu6g00461 293 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 6 290 - -
Vimu6g00461 293 Pfam short chain dehydrogenase 7 169 IPR002347 -
Vimu6g00461 293 Pfam short chain dehydrogenase 212 254 IPR002347 -
Vimu6g00461 293 Gene3D - 2 293 - -
Vimu6g00461 293 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 205 233 IPR020904 GO:0016491
Vimu6g00461 293 FunFam (+)-neomenthol dehydrogenase 1 293 - -
Vimu6g00461 293 CDD carb_red_PTCR-like_SDR_c 6 290 IPR045313 GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu6g00461 Vimu-Chr6 5387645 5396537 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu6g00461 6 254 Acyl Lipid Metabolism Gene Families AT1G63380 27.344 6.35e-11 60.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu6g00461 K15095 - gmx:106797124 478.789
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu6g00461 6 5387645 5396537 Vimu6g00461 6 5387645 5396537 ECH
Vimu6g00461 6 5387645 5396537 Vimu9g00356 9 4270765 4273916 PCT
Vimu9g00357 9 4280675 4283433 Vimu6g00461 6 5387645 5396537 PCT