Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00356 ATGGGAGAAGAAGCAAAAAGGTATGCAGTGGTGACAGGAGCTAACAAGGGAATTGGTTATGGAATATGCAAGAAACTGGCTTTGAATGGAATAGTGGTGGTGCTAACAGCTAGAAATGAGAAAAGGGGTTTGGATGCAATGGAAAGATTGAAAGAGTTTGGTCTCTCAGACCTTCTGGTTTTTCATCAACTTGATGTCACTGACCCTCCTAGTGTTGCTGCTTTGGCACAGTTCATCAAAACCAGATTTGGAAGACTTGACATCTTGGTGAACAATGCAGGTGTTCCTGGAGGACTAGTAAATGGAGAGAATGTTCTTAGAAAGAAAAGGGGCGAAATATCAGATTGGAATATAATAGTTCCACAAAATTATGAGTTAGCAGAAGAATGTGTTGAAATAAACTTTTTTGGTGCAGAAAGAGTAACAGAAGCTCTTCTTCCACTCCTTCAACGATCTACTTCTCCTAGGATTGTCAATGTCTCCTCTAGAAGAGGTGTATTGAAGAATATACCAAATGAGTGGGCAAGAGGAGTGCTGAGTGACATTGATAATCTTACAAACAAAAAGCTTCATGTGGTGTTAAGGGAGTTTCTGAAAGATTACAAAGAAGGATCATTGGAATCGAAGAAGTGGCCAGCTGTTCTTTCTGGCTACACCATGTCGAAAACAGCCTTAAATTCGTATACAAGAATGTTGGCTAAGAAGTTTCCTCGTTTTCGCATAAACTGCTTGTGCCCTGACTTTGTCAAGACTGATCTAAACCAGAATGTAGGGTTTTTAACCATTGATGAAGGTGCTGAGTGCCCTGTCAGATTAGCTCTGTTACCAGATGATGGTCCTTCTGGTCTCTTTTTCTTAAAGAACCAAGTACTTTCTTTTTTCTAA 885 0.4 MGEEAKRYAVVTGANKGIGYGICKKLALNGIVVVLTARNEKRGLDAMERLKEFGLSDLLVFHQLDVTDPPSVAALAQFIKTRFGRLDILVNNAGVPGGLVNGENVLRKKRGEISDWNIIVPQNYELAEECVEINFFGAERVTEALLPLLQRSTSPRIVNVSSRRGVLKNIPNEWARGVLSDIDNLTNKKLHVVLREFLKDYKEGSLESKKWPAVLSGYTMSKTALNSYTRMLAKKFPRFRINCLCPDFVKTDLNQNVGFLTIDEGAECPVRLALLPDDGPSGLFFLKNQVLSFF 294
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00356 294 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Vimu9g00356 294 PRINTS Glucose/ribitol dehydrogenase family signature 237 254 IPR002347 -
Vimu9g00356 294 PRINTS Glucose/ribitol dehydrogenase family signature 149 165 IPR002347 -
Vimu9g00356 294 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Vimu9g00356 294 PRINTS Glucose/ribitol dehydrogenase family signature 218 237 IPR002347 -
Vimu9g00356 294 Pfam short chain dehydrogenase 8 167 IPR002347 -
Vimu9g00356 294 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 7 290 - -
Vimu9g00356 294 CDD carb_red_PTCR-like_SDR_c 7 293 IPR045313 GO:0016616
Vimu9g00356 294 ProSitePatterns Short-chain dehydrogenases/reductases family signature. 205 233 IPR020904 GO:0016491
Vimu9g00356 294 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 279 IPR036291 -
Vimu9g00356 294 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Vimu9g00356 294 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 218 237 IPR002347 -
Vimu9g00356 294 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 155 163 IPR002347 -
Vimu9g00356 294 FunFam (+)-neomenthol dehydrogenase 2 293 - -
Vimu9g00356 294 Gene3D - 3 293 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00356 Vimu-Chr9 4270765 4273916 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00356 10 258 Acyl Lipid Metabolism Gene Families AT1G24360 22.222 4.92e-11 60.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00356 K15095 - gmx:100802560 546.969
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00356 9 4270765 4273916 Vimu9g00356 9 4270765 4273916 ECH
Vimu6g00461 6 5387645 5396537 Vimu9g00356 9 4270765 4273916 PCT