Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00357 ATGCTCCTACAACCTCACTTCTACCTGCCCCACACCGTTCGGCCCTCAGTTGCCCTCATTCCCCAAAACTTTGCCAGTCGGCCCGACCGAACTCCCTCCACTGCATTTGTAGTGACAGGAGCTAACAAGGGGATTGGTTATGGAATATGCAAGAAACTGGCTTTGAATGGAATTGTGGTGGTGCTAACAGCAAGAAATGAAAAAAGGGGTTTGGAAGCAGTGGAAAGATTGAAAGAGTTTGGACTATCAGACTTTGTGGTTTTTCATCAACTTGATGTGACAGAACCTTCCAGTGTTACTTCCTTATCACATTTCATCAAAACCAGATTTGGAAAACTTGATATATTGGTGAATAATGCCGGTGTTCCTGGGGGAATAGTTAATGCAGAGAATTACCTTAGAAGGAAAAGGGGTGAAATATTCGATTGGAATCTGATAGTTTATCAAAATTATGAGTTAGCCAAAGAATGTGTTGAAACAGATTTCTTTGGGGCAGAGAGAGTAACTGAAGCTCTTCTTCCTCTGCTCCAACTCTCCACTTCACCAAGGATTGTCAATATCTCTGGTCAAATAGGACTATTAAAGCACATACCAAATGAGTGGGCAAGAGGAGTTTTGAGTGACATTGAGAATCTGACAAATGAAAAACTTTACGAAGTGCTTAGAGAGTTTCTGAAAGATTACAAAGAAGGATCATTAGAATCGAAAAATTGGCCAGCTGTGGTTTCTGGTGTGACCATGGCAAAAGCAGGTATAAATGCCTACACAAGGATGCTAGCTAAGAAGTTCCCTCATTTTTGCATAAATTGTATATGCCCGGGCTCTGTCAAGACTGATATAAACCACAATCAAGGCTTGTTAAGCATTGATGAAGGTGTTGAAAATCCTGTTAGGCTAGCATTGTTGCCTGAAGATGGTCCTTCTGGCCTCTTTTTCTCAATGGATGAAGTCATTCCGTTTTGA 963 0.4143 MLLQPHFYLPHTVRPSVALIPQNFASRPDRTPSTAFVVTGANKGIGYGICKKLALNGIVVVLTARNEKRGLEAVERLKEFGLSDFVVFHQLDVTEPSSVTSLSHFIKTRFGKLDILVNNAGVPGGIVNAENYLRRKRGEIFDWNLIVYQNYELAKECVETDFFGAERVTEALLPLLQLSTSPRIVNISGQIGLLKHIPNEWARGVLSDIENLTNEKLYEVLREFLKDYKEGSLESKNWPAVVSGVTMAKAGINAYTRMLAKKFPHFCINCICPGSVKTDINHNQGLLSIDEGVENPVRLALLPEDGPSGLFFSMDEVIPF 320
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00357 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 182 190 IPR002347 -
Vimu9g00357 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 111 122 IPR002347 -
Vimu9g00357 320 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 245 264 IPR002347 -
Vimu9g00357 320 FunFam (+)-neomenthol dehydrogenase 29 320 - -
Vimu9g00357 320 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 36 305 IPR036291 -
Vimu9g00357 320 Gene3D - 29 320 - -
Vimu9g00357 320 PRINTS Glucose/ribitol dehydrogenase family signature 264 281 IPR002347 -
Vimu9g00357 320 PRINTS Glucose/ribitol dehydrogenase family signature 176 192 IPR002347 -
Vimu9g00357 320 PRINTS Glucose/ribitol dehydrogenase family signature 35 52 IPR002347 -
Vimu9g00357 320 PRINTS Glucose/ribitol dehydrogenase family signature 111 122 IPR002347 -
Vimu9g00357 320 PRINTS Glucose/ribitol dehydrogenase family signature 245 264 IPR002347 -
Vimu9g00357 320 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 36 317 - -
Vimu9g00357 320 Pfam short chain dehydrogenase 36 194 IPR002347 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00357 Vimu-Chr9 4280675 4283433 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00357 5 285 Acyl Lipid Metabolism Gene Families AT1G24360 21.429 1.91e-10 59.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00357 K15095 - gmx:100802560 467.618
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00357 9 4280675 4283433 Vimu9g00357 9 4280675 4283433 ECH
Vimu6g00460 6 5374652 5385064 Vimu9g00357 9 4280675 4283433 PCT
Vimu9g00357 9 4280675 4283433 Vimu6g00461 6 5387645 5396537 PCT