Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu9g00372 ATGGGGGAAGCTACAGAGAGGTATGCAGTTGTGACAGGAGCAAATAAAGGGATTGGATTAGAGATAGTTAGGCAGTTAGCTTCAGAAGGAATAAAGGTTGTACTCACTGCAAGGAATGAAGAGAGGGGTCTTCAAGCATTGGAAATACTCAAAGCCTCTCCTCTTTCTCATCTACTCTTCTTTCATCAGCTAGATGTCGCTCATCCTGCAAGTGTAGCTGCTTTTGCAGATTTTATCAAATCCAAATTTGGTAAACTTGATATTCTGGTTAACAATGCGGGAATCAGTGGAATTGTAATTGAAGACAGAGACTTATTCACTACATTAATCGTGAATAATGGGGTGATATCAGATGAGGAAGGAACAAGGGCAGTGACTCAAACATATGAGTTAGCAGAAGAATGCTTGCAAATAAATTACTATGGCACTAAAATAACTATTGAATCCCTTATGCCCCTCCTGATTTTATCTGACTCTCCGAGAATTGTGAATGTATCATCCACTAAGGGCCAGTTAAAGAGTTTTCCTAAAGAATCATGGGCAAGAGGAGTGTTGAGCGATGTTGATAACCTGACAGAAGAGAAAATGGATGAAATAGTGAAGAAATTTCTAAGTGATTTCAAAGAAGGTTCATTAGAGAGTAAAGGGTGGCCAAGGTATCTAGGTGCATATATTGTATCAAAAGCTGCTATGAATGGGTATACGAGAATCCTTGCTAAGAAACATCCATCATTCTGCATAAACAGTGTTTGCCCTGGTTATGTGAAGACAGATATAACATCAAACACTGGTTTTCTAACAGTTGAAGAAGGTGCTGCTAGTCCTGTCAACCTTGCACTTCTTCCCAATGGCTCTCCATCTGGTCTCTTCTATCACAGAACTGATGTCGCTTCTTTTTGA 900 0.3967 MGEATERYAVVTGANKGIGLEIVRQLASEGIKVVLTARNEERGLQALEILKASPLSHLLFFHQLDVAHPASVAAFADFIKSKFGKLDILVNNAGISGIVIEDRDLFTTLIVNNGVISDEEGTRAVTQTYELAEECLQINYYGTKITIESLMPLLILSDSPRIVNVSSTKGQLKSFPKESWARGVLSDVDNLTEEKMDEIVKKFLSDFKEGSLESKGWPRYLGAYIVSKAAMNGYTRILAKKHPSFCINSVCPGYVKTDITSNTGFLTVEEGAASPVNLALLPNGSPSGLFYHRTDVASF 299
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu9g00372 299 PRINTS Glucose/ribitol dehydrogenase family signature 224 243 IPR002347 -
Vimu9g00372 299 PRINTS Glucose/ribitol dehydrogenase family signature 243 260 IPR002347 -
Vimu9g00372 299 PRINTS Glucose/ribitol dehydrogenase family signature 84 95 IPR002347 -
Vimu9g00372 299 PRINTS Glucose/ribitol dehydrogenase family signature 8 25 IPR002347 -
Vimu9g00372 299 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 84 95 IPR002347 -
Vimu9g00372 299 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 160 168 IPR002347 -
Vimu9g00372 299 PRINTS Short-chain dehydrogenase/reductase (SDR) superfamily signature 224 243 IPR002347 -
Vimu9g00372 299 FunFam (+)-neomenthol dehydrogenase 2 299 - -
Vimu9g00372 299 Gene3D - 3 299 - -
Vimu9g00372 299 Pfam short chain dehydrogenase 8 173 IPR002347 -
Vimu9g00372 299 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 7 285 IPR036291 -
Vimu9g00372 299 PANTHER (+)-NEOMENTHOL DEHYDROGENASE 7 296 - -
Vimu9g00372 299 CDD carb_red_PTCR-like_SDR_c 7 296 IPR045313 GO:0016616
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu9g00372 Vimu-Chr9 4399331 4401065 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu9g00372 3 260 Acyl Lipid Metabolism Gene Families AT1G63380 27.037 2.80e-09 55.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu9g00372 K15095 - gmx:100801677 477.633
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu9g00372 9 4399331 4401065 Vimu9g00372 9 4399331 4401065 ECH
Vimu9g00372 9 4399331 4401065 Vimu6g00454 6 5337752 5346063 PCT