Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01610 ATGCAGCTTCATTGCATAAGGGTATTGCCTTGGCAACCGGTAAAGTGGTTATTACGTTATGAAACTGATAAATTGAATGTTGTTTCAGAAGGTTGCAATTCCAGAATTGTAAGCACCGACAGTCACGTGATGCAAGAATTGGAAATGAAGCGCGATAAAGACATTTATGGTGAAGTTTACAAGAGTCATAATTCCATTCAAACGTTGGACAAGACTATTTCAAACTTAGAGATGGAATTGGCTGCTGCAAGGGCAACTCAGGAGTCTCTACGAAGTGGTGCTCCTGTTTCGGATGATATAAGGATGAGTGAATCATCTGGGAAGAGAAAGTACCTTATGGTCATTGGTATTAATACTGCATTTAGCAGCAGGAAAAGAAGGGACTCGGTTCGTGCCACTTGGATGCCACAAGGTGAGAAAAGAAAGAAGCTAGAGGAGAAGGGTATCATCATCCGCTTTGTAATTGGACACAGTGCTACATCAGGGGGAATTCTTGACAGAGCTATTGAAGCTGAGGACAGAAAGCATGGAGATTTCTTGAGGCTGAATCATGTGGAAGGATACCTTGAATTGTCAGCAAAGACAAAAACCTATTTTGCCACTGCTGTGAACTTGTGGGATGCTGATTTCTATGTCAAAGTTGATGATGATGTTCATGTAAATATAGCAACACTGGGGGAAACTCTGGTTAGACACAGATCGAAACCACGCATATACATTGGGTGCATGAAATCTGGGCCAGTCCTATCTCAAAAAGGAGTAAGATACCATGAACCTGAGTACTGGAAATTTGGAGAGGCTGGAAACAAGTATTTCCGACATGCCACAGGGCAGTTGTATGCCATTTCAAACGATTTGGCTACATACATATCAATTAACCAGGATGTTCTTCACAAGTATGCCAACGAGGATGTCTCACTAGGATCTTGGTTTATTGGACTTGATGCGGAGCATATAGATGATAGAAGACTTTGCTGTGGCACTCCTCCAGATTGTGAGTGGAAGGCCCAAGCAGGCAACATTTGTGTTGCATCGTTTGATTGGAGCTGCAGTGGAATTTGCAGGTCTGCTGAGAGGATTAAAGAGGTACATAGGAGGTGTGGAGAGGGAGGTTACACTGGAGTTCTTCCTAACTCGGGAAGATTATACTACTAA 1155 0.4277 MQLHCIRVLPWQPVKWLLRYETDKLNVVSEGCNSRIVSTDSHVMQELEMKRDKDIYGEVYKSHNSIQTLDKTISNLEMELAAARATQESLRSGAPVSDDIRMSESSGKRKYLMVIGINTAFSSRKRRDSVRATWMPQGEKRKKLEEKGIIIRFVIGHSATSGGILDRAIEAEDRKHGDFLRLNHVEGYLELSAKTKTYFATAVNLWDADFYVKVDDDVHVNIATLGETLVRHRSKPRIYIGCMKSGPVLSQKGVRYHEPEYWKFGEAGNKYFRHATGQLYAISNDLATYISINQDVLHKYANEDVSLGSWFIGLDAEHIDDRRLCCGTPPDCEWKAQAGNICVASFDWSCSGICRSAERIKEVHRRCGEGGYTGVLPNSGRLYY 384
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01610 384 Coils Coil 66 86 - -
Vimu5g01610 384 Pfam Galactosyltransferase 125 320 IPR002659 GO:0006486|GO:0016020|GO:0016758
Vimu5g01610 384 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 70 319 IPR002659 GO:0006486|GO:0016020|GO:0016758
Vimu5g01610 384 FunFam Hexosyltransferase 105 325 - -
Vimu5g01610 384 Pfam Domain of unknown function (DUF4094) 23 85 IPR025298 -
Vimu5g01610 384 Gene3D - 107 321 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01610 Vimu-Chr5 27614979 27617665 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01610 21 370 Glycosyltransferase AT1G05170 80.114 0.0 597
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01610 K20855 - gmx:100794838 670.233
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g01610 5 27614979 27617665 Vimu5g01610 5 27614979 27617665 ECH
Vimu5g01610 5 27614979 27617665 Vimu7g02056 7 18357162 18362325 ECH
Vimu4g00887 4 7206237 7210532 Vimu5g01610 5 27614979 27617665 PCT