Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00887 ATGACTTGGAAAAGCAGGGGAGACTTGCTTCCCAAAAGTGTTATGTCTAAGAAATGGGTGATTTTTCTCTGTATTGGAAGCTTCTGTGCTGGGATGGTTTTCACCAACAGGATGTGGACTATGCCTGAACCTAAAGGACTTGGACGAACAACAGCCATGGAAGCTGAAAAATTGAATGTAGTTTCAGAGGGTTGTAATACAAGAATTTTGCAAGAGAAGGAAGTGAAGCGTGAAAGTAAAGGCATCTATAGAGAGGTTTCAAAGACACAAAATGCCATACAAACCCTTGATAAGACTATTTCAAACTTGGAGATGGAATTAGCAGCTGCAAAGGCAGCTCAGGAGTCTATACGAAGTGGTGCTCCGGTACCAGCAAATATCAAGATGAATGAATCATCTGGCAGAAGAAGGTACCTAATGGTCGTAGGAATCAACACTGCTTTCAGCAGCAGAAAAAGAAGAGACTCAGTTCGTGAGACATGGATGCCACAAGGTGAGAAAAGAAAGAAGCTAGAGGAAGAGAAGGGCATTATCATCCGATTTGTAATTGGTCATAGTGCCACATCAGGGGGTATCCTAGACAGAGCAATTGAAGCAGAAGATAAGAAGCATGGAGATTTTCTGAGACTGGATCATGTTGAGGGATACCTTGAATTGTCAGCAAAGACAAGGACCTACTTTGCCACTGCTGTTAACTTATGGGATGCTGACTTCTATATCAAAGTTGATGACGATGTTCACGTAAATATAGCGACACTAGGACAAACTCTAGTGAGACACCGATCAAAGCCACGGGTGTACATTGGATGCATGAAATCTGGGCCTGTTCTTTCTCAAAAAGGGGTAAGGTACCACGAGCCAGAATACTGGAAATTTGGTGAGGCTGGAAACAAGTATTTCCGTCATGCCACGGGACAGTTGTATGCCATTTCAAAAGATCTGGCTACATACATTTCAAACAACAAGCACGTTCTCCACAAGTATGCCAATGAGGATGTCTCACTAGATTGTGAATGGAAAGCACAGGCAGGAAATGTTTGTGTTGCTTCATTTGATTGGACTTGCAGTGGAATTTGCAGGTCTGCTGAAAGGATCAAAGAGGTTCACAAGAGATGTGGGGAAGGTGAAAAAGCTTTGTGGAATGGGAGCTAG 1152 0.4297 MTWKSRGDLLPKSVMSKKWVIFLCIGSFCAGMVFTNRMWTMPEPKGLGRTTAMEAEKLNVVSEGCNTRILQEKEVKRESKGIYREVSKTQNAIQTLDKTISNLEMELAAAKAAQESIRSGAPVPANIKMNESSGRRRYLMVVGINTAFSSRKRRDSVRETWMPQGEKRKKLEEEKGIIIRFVIGHSATSGGILDRAIEAEDKKHGDFLRLDHVEGYLELSAKTRTYFATAVNLWDADFYIKVDDDVHVNIATLGQTLVRHRSKPRVYIGCMKSGPVLSQKGVRYHEPEYWKFGEAGNKYFRHATGQLYAISKDLATYISNNKHVLHKYANEDVSLDCEWKAQAGNVCVASFDWTCSGICRSAERIKEVHKRCGEGEKALWNGS 383
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00887 383 FunFam Hexosyltransferase 132 342 - -
Vimu4g00887 383 Pfam Domain of unknown function (DUF4094) 16 112 IPR025298 -
Vimu4g00887 383 Coils Coil 86 113 - -
Vimu4g00887 383 Gene3D - 136 350 - -
Vimu4g00887 383 Pfam Galactosyltransferase 152 335 IPR002659 GO:0006486|GO:0016020|GO:0016758
Vimu4g00887 383 SUPERFAMILY PspA lactotransferrin-binding region 51 112 - -
Vimu4g00887 383 PANTHER BETA-1,3-N-ACETYLGLUCOSAMINYLTRANSFERASE 97 343 IPR002659 GO:0006486|GO:0016020|GO:0016758
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00887 Vimu-Chr4 7206237 7210532 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00887 1 383 Glycosyltransferase AT1G05170 71.182 0.0 620
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00887 K20855 - gmx:100793931 731.095
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00887 4 7206237 7210532 Vimu4g00887 4 7206237 7210532 ECH
Vimu4g00887 4 7206237 7210532 Vimu7g02056 7 18357162 18362325 ECH
Vimu4g00887 4 7206237 7210532 Vimu5g01610 5 27614979 27617665 PCT