Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g01565 ATGAAGGAGAAAGAATTGAGAGGAATGAAGGAGGGAAAAAGGTTTTGGAGTGAAAGAGATGAAAGAGAAAGGTTGAGAGGAATGAGAGAGAATCTCGTATACGAAGCTACAAGGGCAAAATGTGTCCTTGTCCACACATTGTTCTTGAGGACACCAAGGTTTGCCAAAGTCACCGTCACTTGGCGGTTTATTTTGTCCCTCTTTTTCCCACTGCAACTGCAACCACCGTTAATTAAACGAAAAGCGATGTTCAAACGAAGAAAAAAGGATCAGAGTTTTAGTAGTGATAGCAGTGCCTCAGATACAGCGATGCCTCCTTTTCCTCACGTCAGAACAACTCCAACACCTTCATTCAAATCCTTCCTCTTGATGCTTTCCATTCTCCTCAACCTCTACCTCCTCTTCCTCACGTGGGCCCCATCATCCGCGCCACTTACCTCACCCACTCGCATCACCACCCTCTCCCCGACCACGCGCCGCCACCTTCTTTTCTCCGTCGCCTCCTCCTCCCTCTCATGGCATCGCCGCCTCCCCTACCTCCGCCTCTGGTACTCCCCCAACTCCACTCGCGCCCTCGCTTTCCTCGACAAACCACCGCCACTTCCTCTCAACTCCTCCTCCTCCTTTTCCCCACTGGTCGTGATCTCTGCTGATACCTCCGCGTTCCCCTATACTTTCCGCGGGGGGCTGAGGTCTGCGATCCGAGTGGCGCGAGCTGTGAAGGAGGCCGTGGATCGTAATGAGTCAGACGTGCGGTGGTTCGTGTTTGGCGACGACGACACGGTGTTCTTCGTCGACAACGTGGTTCGGGCGCTAGCGCGGTACGACCACCGCCGGTGGTTCTACGTCGGGAGCAACTCCGAGAGCTATGAGCAGAACGTGAAGTACTCGTTCCAGATGGCGTTCGGCGGTGGCGGCTTCGCGATCAGCAGTTCCCTCGCCAGGGTTTTGGCGAGGGTTTTGGACTCTTGTTTGAGGAGGTACGCACACTTGTATGGCAGCGATTCTAGGATTTATTCCTGCGTTGCTGAGCTCGGTGTTGGCTTGACTCATGAACCTGGCTTTCATCAGTTGGACATGCGGGGGAATTTGTTCGGGATGCTAGCTGCATATCCATTATCTCCGTTGTTGTCCCTTCATCACTTGGAAGCAATGGAGCCCATATTTCCCGACATGGACAGAGTACAGGCTTTGGAACATCTTGTTGCTGCTGCAAATGTAGATCCTGCCAGGATCCTGCAGCAAACTGTCTGCTATGATCAGTCAAATTCTTTGACTTTCTCTGTTTCTTGGGGTTTTGCTATCCAAGTTTATCAAGGAAATGAACTTGTACCTGACCTCCTTTCGGTGCAGAGAACTTTTGTTCCATGGAGGAGGGGTAGTAAAGTCGATGCCAATTTCATGTTTAACACCAGAGACTATCTCAGAGATCCTTGTAAAAGGCCTTCAGTTTTTTTCTTGAAAAGTGCTACATCTCATAAAAGGGGCATTTGGAGCAGTTACAATAGGCATGATGTTGGGAACTGCTTTGAATCCAATGTTAGACAGCTCGAGCAGATCATAGTTTTTTCACGGAAGCTGGAGCTTAACATTGACCAGATGAATGCTCCCCGTCGTCAGTGCTGTAGCGTTTTACCAACATCCACTAATGATACAACCAATCTTCACATTAGACACTTTGGAAATTTCATGAGCATGAATGTTCGTGTTGTAGGTGATATAAGGCGGATGCGGCTTCTTTTTGGATATGCGGAACTTGATTCTGTTCTATTTCTGAAAGTTGAAGAGAATGGTAAACGCAAATATTCTTTAGAGAGAAAGATCCCTGTCCTCATTGTTGAAAAAGAATTATCAAAGCTCAAAGAGTACACGTTTTATCCACTTCTGATATCCAAAATTGCAGGTAGTTTCTCCTGGTATTTGGAGTGTGATAACCTCAGTGAAGAGTCCAATTTTAATTTGGAACGTGATCACCACAAGGACCACAACAGAACTAGATCCATTGTCGTCAAGATGCAGCTTTTTCACAAACCCACCAAGGCTCAAACTCTGGTTAATTTCATCTTAGTCTCTTCTTCATTCTGCGCCCTTTATCTCGTCGTGTCAGTGCTACTATTGGGGACATCAAGGGTAGTACAGGTGAACAAGACATCACAGGATGTGTCCAGGCCTACCACTCTTGATCACCTTGTCTTTGGAATTGCTTCAAGCAAGAGTTCATGGGGAAAAAGGAAGGAATACGTGAAGCTTTGGTGGAACAACATCAACAGCACCACCAACAAAGCAATGAAGGGGTGCGTATTCCTGGACAGCCTCCCAGATGAAGAACATGTCAGCAACGATACTTCTCTTCCTCCTCTTTGTGTCTCTGAAGACACTTCGAGGTTTCGTTTCACTCACAAGGGTGGACTTCGCTCCGCGATACGCGTTGCGCGTGTTGTTACCGAGACCGTGGCAATGAACAATGATTCAGACGTGAGATGGTTCGTTTTTGGAGATGATGACACGGTTTTCTTCCCGGAGAATGTGGTGAAGACTCTTTCCAAATATGATCACAAGCTCTGGTACTACATTGGTGCACACTCTGAGGTTTATGAGCAGAACCGGGTGTTTGGTTTTGGAATGGCTTTTGGTGGGGCAGGTTTTGCTATCAGCTCCTCTCTGGCAAAGGTTTTGGCCAAGGTTTTTGATTCATGTATAGAAAGGTACCCTCATCTCTATGGAAGTGATGGAAGGGTGTACTCTTGCTTGGCAGAACTTGGGGTAGGATTAACACATGAACCCGGCTTTCACCAGGTAGATTTGAAGGGAAATACCTTTGGTTTATTGGCGGCACATCCTTTGACTCCTTTGCTGTCCCTGCATCATCCTGATTACACTGATCCAATCTTTCCAAACATGACAACCACACAAGCTCTGAAGCATTTATTTGAAGCTGTAAATGTTGATTCCCAGAGGTTGCTGCAACAGGCAATTTGCTATGACAGACGGTTTTCATGGACAGTTTCAGTTTCATGGGGCTATGCTGTTCAGGTTTTCCCAAACCATATGCTTTTGCCAGATGTTCTAAAGGTGCAAGAGACATTCAAGCAGTGGAAGAAGGGAAGTATGTTGGCAAAAACATACACTTTCAACACAAGACAACTTCACAACGACCCTTGTAAAAGATCCACCGTTTTCTTTCTAGACACTGTCTCATCTTCCAAGGATGGCATCATAAGCAGTTACAAGAAGTCTTTTCAGAATTGCTCAAACGATGCCGTGTCACCGAACAAACTGGAAGTGATCAAAGTCCTCTCACAAAATTTAGACCTTGACATCAAACAGTTGCTTGCTCCAAGAAGGCATTGCTGTGATGTGTTGCCCTCTACTGCCAAGGACAAAATGGAAATCGCAATCAGGGAATGCAAAGATCAGGAGTTGTCTCCTCGTCATCTGCTCCCATCCAAGTGGATGATCATCGCAAGAGAAAACACGCAGACATGGCACAACACAAACAAGCAAGCAAGGGCTCCACCGCCTTGGGCTCCCCCGCCCTGCCACATTCACGAGGTTAGTCTGTTCCGCGCCCCGGAGCATGATGAAAGCCTCCAAGACTAA 3600 0.4728 MKEKELRGMKEGKRFWSERDERERLRGMRENLVYEATRAKCVLVHTLFLRTPRFAKVTVTWRFILSLFFPLQLQPPLIKRKAMFKRRKKDQSFSSDSSASDTAMPPFPHVRTTPTPSFKSFLLMLSILLNLYLLFLTWAPSSAPLTSPTRITTLSPTTRRHLLFSVASSSLSWHRRLPYLRLWYSPNSTRALAFLDKPPPLPLNSSSSFSPLVVISADTSAFPYTFRGGLRSAIRVARAVKEAVDRNESDVRWFVFGDDDTVFFVDNVVRALARYDHRRWFYVGSNSESYEQNVKYSFQMAFGGGGFAISSSLARVLARVLDSCLRRYAHLYGSDSRIYSCVAELGVGLTHEPGFHQLDMRGNLFGMLAAYPLSPLLSLHHLEAMEPIFPDMDRVQALEHLVAAANVDPARILQQTVCYDQSNSLTFSVSWGFAIQVYQGNELVPDLLSVQRTFVPWRRGSKVDANFMFNTRDYLRDPCKRPSVFFLKSATSHKRGIWSSYNRHDVGNCFESNVRQLEQIIVFSRKLELNIDQMNAPRRQCCSVLPTSTNDTTNLHIRHFGNFMSMNVRVVGDIRRMRLLFGYAELDSVLFLKVEENGKRKYSLERKIPVLIVEKELSKLKEYTFYPLLISKIAGSFSWYLECDNLSEESNFNLERDHHKDHNRTRSIVVKMQLFHKPTKAQTLVNFILVSSSFCALYLVVSVLLLGTSRVVQVNKTSQDVSRPTTLDHLVFGIASSKSSWGKRKEYVKLWWNNINSTTNKAMKGCVFLDSLPDEEHVSNDTSLPPLCVSEDTSRFRFTHKGGLRSAIRVARVVTETVAMNNDSDVRWFVFGDDDTVFFPENVVKTLSKYDHKLWYYIGAHSEVYEQNRVFGFGMAFGGAGFAISSSLAKVLAKVFDSCIERYPHLYGSDGRVYSCLAELGVGLTHEPGFHQVDLKGNTFGLLAAHPLTPLLSLHHPDYTDPIFPNMTTTQALKHLFEAVNVDSQRLLQQAICYDRRFSWTVSVSWGYAVQVFPNHMLLPDVLKVQETFKQWKKGSMLAKTYTFNTRQLHNDPCKRSTVFFLDTVSSSKDGIISSYKKSFQNCSNDAVSPNKLEVIKVLSQNLDLDIKQLLAPRRHCCDVLPSTAKDKMEIAIRECKDQELSPRHLLPSKWMIIARENTQTWHNTNKQARAPPPWAPPPCHIHEVSLFRAPEHDESLQD 1199
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g01565 1199 FunFam Fringe-related protein-like 717 981 - -
Vimu5g01565 1199 FunFam Fringe-related protein 151 394 - -
Vimu5g01565 1199 Gene3D - 152 371 - -
Vimu5g01565 1199 Gene3D - 717 986 - -
Vimu5g01565 1199 MobiDBLite consensus disorder prediction 89 108 - -
Vimu5g01565 1199 PANTHER FRINGE-RELATED 689 1140 - -
Vimu5g01565 1199 Pfam Protein of unknown function, DUF604 292 542 IPR006740 -
Vimu5g01565 1199 Pfam Protein of unknown function, DUF604 867 1118 IPR006740 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g01565 Vimu-Chr5 27117553 27130900 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g01565 145 559 Glycosyltransferase AT4G15240 62.110 0.0 541
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g01565 - - gmx:100813816 818.535
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00920 4 7581346 7582938 Vimu5g01565 5 27117553 27130900 PCT
Vimu5g01565 5 27117553 27130900 Vimu4g00921 4 7600160 7602114 PCT