Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00920 ATGAAAACCCAAACTCTGATTAAATTAATTTTAGTCTGTTCTTCATTTTTTACCATTTCAATCTGCGTATCAGTGCTAATCCTAGCAAAAACAAAGGTAGTAGAACTGAGTTATTCACCACAAGTGTCACAGTCTGATCCTACCACTGTTGATCATCTTGTATTTGGAATTGCCTCAACCGGAAATTCATGGTTTCGGAGGAAGCAATACATAAAACTATGGTGGAACAGCATACCCAATAAAACCATGAGAGGATGTGTTTTCGTAGATACCCTCCCACATGGAGAAAAAGCCAACAACGATGCTTCTCTTCCTCCTCTCTGTGTCTCTCAAGACACTTCCAAGTTTCTCTACACTCACAAGGGTGGTCTACGGTCGGCAATCCGTTTGACACGTATTGTGAAAGAGATCGTGGCATTCAACCATTCTCGTGTTAGATGGTATGTGTTTGGGGATGATGACACCATTTTCTTCCCTCACAATCTGCTCAAAACACTTTCCAAATATGACCACAGGCTTTGGTACTATGTTGGGTCAACCTCGGAGATTTATGATGCCACCCAGGTTTTTGGTTTTGGAATGGCATTCGGTGGAGGTGGTTTTGCCATCAGTTCCTCCCTGGCACAAGTCCTAGCCAAGGTTCTTGATTCATGCATACAAAGGTATCCATATCTGTATGGAAGCGATGCTAGGGTCTACTCTTGCATAACTGAACTAGGTGTCGGATTAACACATGAACCAGGTTTTCATCAGGTCGATTTGCGGGGAAATATCTTTGGCCTTTTGGCTTCTCATCCGTTAACTCCCTTATTGTCCTTACATCACCCAGATCACACTGATCCTATCTTTCCCAACATGCCAACCAAAAAATCACTGCAACATTTATTTGAAGCTGTTCATGTCGATTCCGAGAGGATCCTACAACAATCAGTTTGTTACGAAAAGAGGTTGTCATGGACAATTTCAGTTTCATGGGGCTATTCTGTTCAAGTGTTCCAGAACAACATGGTTTTGCCTGAGGTTTTGAGAGTGGAGAAAACATTCAGACAATGGTTGCCAGGAAATGTTTTTAAAGGAATATATAATTTCAACACAAGAGAATATCACCGCGAACCATGTAAAAGACCCACCGTTTTCTACCTAGATGAAGTGTCTTCTGCCAAATATGGTAGCATAAGCAGTTACAAGAGACATTTTCAAAATTGTTCATACAATTCATCAATGAGTAAACTGGAAGTGATCAAAGTGGTGACAGATGAGTTACACTATGACAGCAAACAGACCCGAAGACGGCAGTGTTGTGATGTGTTGCCCTCTAATGCTGGTAAGTTGATGGAAATTGCAATCAGAGAGTGCAATTATGAAGAACTGATTTTTATGAACTGA 1386 0.4113 MKTQTLIKLILVCSSFFTISICVSVLILAKTKVVELSYSPQVSQSDPTTVDHLVFGIASTGNSWFRRKQYIKLWWNSIPNKTMRGCVFVDTLPHGEKANNDASLPPLCVSQDTSKFLYTHKGGLRSAIRLTRIVKEIVAFNHSRVRWYVFGDDDTIFFPHNLLKTLSKYDHRLWYYVGSTSEIYDATQVFGFGMAFGGGGFAISSSLAQVLAKVLDSCIQRYPYLYGSDARVYSCITELGVGLTHEPGFHQVDLRGNIFGLLASHPLTPLLSLHHPDHTDPIFPNMPTKKSLQHLFEAVHVDSERILQQSVCYEKRLSWTISVSWGYSVQVFQNNMVLPEVLRVEKTFRQWLPGNVFKGIYNFNTREYHREPCKRPTVFYLDEVSSAKYGSISSYKRHFQNCSYNSSMSKLEVIKVVTDELHYDSKQTRRRQCCDVLPSNAGKLMEIAIRECNYEELIFMN 461
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00920 461 Gene3D - 40 283 - -
Vimu4g00920 461 PANTHER FRINGE-RELATED 6 458 - -
Vimu4g00920 461 Pfam Protein of unknown function, DUF604 189 434 IPR006740 -
Vimu4g00920 461 FunFam Fringe-related protein-like 40 300 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00920 Vimu-Chr4 7581346 7582938 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00920 47 427 Glycosyltransferase AT1G05280 55.270 1.30e-152 440
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00920 - - gmx:100779943 694.501
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00920 4 7581346 7582938 Vimu4g00920 4 7581346 7582938 ECH
Vimu4g00920 4 7581346 7582938 Vimu5g01565 5 27117553 27130900 PCT