Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00526 ATGAGGATCTTGGTCACTGGAGGAGCTGGATTCATTGGATCTCACTTAGTTGACAGATTGATGGAAAATGAAAAAAATGAGGTCATTGTTGCTGACAACTACTTCACTGGATCCAAGGACAACCTCAAAAAGTGGATTGGCCATCCAAGATTTGAGCTTATCCGTCATGATGTCACGGAGCCTTTGCTGATAGAGGTTGATCAGATCTATCATCTTGCATGCCCTGCCTCTCCTATATTCTACAAATACAATCCAGTGAAGACTATAAAGACTAATGTCATAGGCACTCTCAATATGCTTGGGCTTGCAAAGAGAGTAGGAGCAAGGATTTTGCTTACATCAACTTCTGAGGTATATGGAGATCCTCTTGTGCACCCTCAACCTGAAAGCTATTGGGGCAATGTTAACCCTATTGGTAGTTGTTATGATGAGGGGAAACGGGTGGCTGAAACTTTGATGTTTGATTACCATAGGCAGCATGGGATTGAAATACGCATTGCAAGAATCTTTAACACATATGGACCGCGCATGAATATTGACGATGGGCGTGTTTCCAAAGTCCAGGAACTCAAACTCGAAGTTTCTGTTATGTCTCTGACCTGGTATATATCCTATAATCTTTGTATCTTTGAATTACTACTACCTGAATGTGATTATGATTTTTATGAGATGTCCCAGGTTGATGGTCTTATTCGCCTCATGGAAGGGCCAAACACCGGGCCAATCAACCTTGGAAACCCCGGTGAATTTACAATGATTGAACTTGCTGAGACTGTCAAAGAGCTTATAAATCCTGATGTTGAGATCAAGATGGTGGAGAACACTCCTGATGATCCGAGACAAAGAAAACCAGACATAACAAAAGCAAAAGAATTGTTGGGATGGGAGCCAAAGGTAAAGTTGAGGGATGGTCTTCCTCTCATGGAAGAAAATTTCCGTCTGAGGCTTGGAGTTGACAAGAAGAAGTAG 969 0.42 MRILVTGGAGFIGSHLVDRLMENEKNEVIVADNYFTGSKDNLKKWIGHPRFELIRHDVTEPLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQPESYWGNVNPIGSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVSKVQELKLEVSVMSLTWYISYNLCIFELLLPECDYDFYEMSQVDGLIRLMEGPNTGPINLGNPGEFTMIELAETVKELINPDVEIKMVENTPDDPRQRKPDITKAKELLGWEPKVKLRDGLPLMEENFRLRLGVDKKK 322
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00526 322 FunFam UDP-glucuronic acid decarboxylase 6 1 317 - -
Vimu4g00526 322 Gene3D - 1 191 - -
Vimu4g00526 322 Pfam GDP-mannose 4,6 dehydratase 4 178 IPR016040 -
Vimu4g00526 322 CDD UGD_SDR_e 1 313 - -
Vimu4g00526 322 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 1 185 IPR044516 GO:0042732|GO:0048040|GO:0070403
Vimu4g00526 322 Gene3D - 221 316 - -
Vimu4g00526 322 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 1 313 IPR036291 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00526 Vimu-Chr4 3835149 3837879 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00526 1 175 Miscellaneous Gene Families AT3G23820 27.660 1.07e-11 63.5
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00526 K08678 - qsu:112026144 543.502
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00526 4 3835149 3837879 Vimu4g00526 4 3835149 3837879 ECH
Vimu4g00526 4 3835149 3837879 Vimu5g02065 5 32420773 32424812 PCT
Vimu5g02066 5 32427549 32435885 Vimu4g00526 4 3835149 3837879 PCT