Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02065 ATGGCATCGAATTCTTCTGATGGAGATTCTAGTAAATCACCGAAGCAGCCACCCCTGCCATCTCCCTTGCGTTTCTCCAAATTCTATCAGGTGTACCGTCGGTTTTCTATTTTACGGTTTTCTTGCCGCGTTGTTGCTCTTATTGTTATCTGGATCTCTAACATGAGAATCTTGATCACTGGAGGAGCTGGATTCATTGGTTCTCACCTAGTCGATAGATTGATGGAAATAGAAAAAAATGAGGTCATTGTTGTCGATAACTACTTCACCGGATCAAAGGATAATCTCAAAAAATGGATGGGTCATCCCAGATTTGAGCTTATCCGTCATGATATCACTGAACCTTTGATAATTGAGGTTGATCAGATCTACCATCTTGCATGCCCTGCATCTCCTATTTTCTACAAATATAATCCGGTGAAGACAATAAAGACAAATGTGATTGGCACGCTGAACATGCTTGGGCTTGCAAAGCGAGTTGGAGCAAGGATTCTACTTACCTCAACATCTGAGGTATATGGGGATCCTCTTGAGCATCCCCAAAATGAAAGCTATTGGGGAAATGTGAACCCTATTGGAGTTCGTAGTTGTTATGATGAGGGAAAGCGTGTAGCTGAGACTTTGATGTTTGACTATCATAGGCAGCATGGCTTAGAAATACGTGTTGCAAGAATCTTTAACACGTATGGGCCGCGCATGAATATTGACGATGGGCGTGTTGTCAGCAACTTCATTGCTCAAGCACTTCGTGGTGAACCCTTGACGGTCCAGTCTCCAGGGACACAAACTCGCAGTTTCTGCTATGTCTCTGATCTGGTCGATGGCCTTATCCGTCTCATGGAAGGATCCCACACGGGGCCAATCAACCTCGGAAATCCAGGTGAATTTACAGTTCTTGAACTTGCTGAGAAAGTTAAGGAGCTAGTTAATCCAGATGTAGAGATAAAGATGGTGGAAAACACTCCTGATGATCCCCGGCAGAGAAAACCAGACATAACAAAAGCAAAGGAGGTACTTCAGTGGGAACCAAAGTTTCAGCTGCGAGATGGTCTACCTCTAATGGAAGAAGATTTCCGTTTGAGGCTTGGAGTTGTCAAAAAATAA 1104 0.4366 MASNSSDGDSSKSPKQPPLPSPLRFSKFYQVYRRFSILRFSCRVVALIVIWISNMRILITGGAGFIGSHLVDRLMEIEKNEVIVVDNYFTGSKDNLKKWMGHPRFELIRHDITEPLIIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLEHPQNESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGLEIRVARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQSPGTQTRSFCYVSDLVDGLIRLMEGSHTGPINLGNPGEFTVLELAEKVKELVNPDVEIKMVENTPDDPRQRKPDITKAKEVLQWEPKFQLRDGLPLMEEDFRLRLGVVKK 367
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02065 367 Gene3D - 178 362 - -
Vimu5g02065 367 Gene3D - 52 177 - -
Vimu5g02065 367 CDD UGD_SDR_e 55 359 - -
Vimu5g02065 367 FunFam UDP-glucuronic acid decarboxylase 6 54 363 - -
Vimu5g02065 367 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 48 359 IPR036291 -
Vimu5g02065 367 Pfam GDP-mannose 4,6 dehydratase 58 352 IPR016040 -
Vimu5g02065 367 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 53 362 IPR044516 GO:0042732|GO:0048040|GO:0070403
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02065 Vimu-Chr5 32420773 32424812 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02065 53 367 Miscellaneous Gene Families AT1G02000 24.000 1.59e-16 78.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02065 K08678 - gmx:100790835 622.468
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00526 4 3835149 3837879 Vimu5g02065 5 32420773 32424812 PCT