Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02066 ATGACCATCAAGCTTCTTGTTGCTTGGTGGTGTATGAAGAAGCTCACATTAGTGGTAGATGAAGAAAGGAGAGGTTACACCGTATTAAAGGAAGAAGAAGGAATGTTGTATTCGGTTACAGCACGCCTAGAAGAAAAACAAGAAGAGGTGTATTTGGTTACACCATCCTCGTATCCGGTTATAGCAAATGAAAAACGAGCATTGATGACGGTGGAGTTGCAGCTCTGGACGAAGGTGGACGATGCAGCCTTCGAAGGCGTCAGTTGGAAGCCTGAAGGTGGACGACACAACGAGCATGAGATATCCCTGGTGGTGGTGGACGATGCAGCGAGGACGAAGGTCTTGGTGAACGATGGAGGCTCCTCTCGGTGGATGATGCAAAGAGGCGGCGATGAAGGAAATGAGATGGAGCTTGACGTACATGCCTCGACCAGGGGACGGGGCGCCGCAGAGGGTGACGCTGATACCGGGGACGAAATTGGGCTTCTGGTGACGAACACGGTGGAGCAGATGATGGAGGCCATGCGTGTCCCTCTTTACTTTGAGAAGTACGAGGTGCACGGGGACATGAGGCATGTGCCGGAGGAGGTTCTAGATTCGATTAGGAAGAACAAGGTTTGCTTGAAGGATGGTTCGAGGACTCCGATGGTGGGTTTTCTCACAATGGCAACGAATTCTTCCAATGGAGCAACAAAGCAACCCCCAATGCCATCCCCCTTGCGTTTTTCCAAGTTTTTTCAGTCCAATATGAGAATTCTGGTTACTGGAGGAGCTGGATTTATTGGCTCTCACCTAGTTGACAGATTGATGGAAAATGAAAAAAATGAGGTTGTTGTTGCTGACAATTTCTTCACTGGATCTAAAGACAACCTTAAAAAATGGATTGGCCATCCAAGATTTGAGTTAATCCGCCATGATGTCACAGAGCAATTGTTGATTGAGGTTGATCAAATCTATCATCTTGCATGTCCTGCTTCTCCAATTTTCTACAAATACAACCCTGTAAAGACAATAAAAACAAATGTGATTGGAACACTGAATATGCTTGGGCTCGCTAAACGAGTGGGAGCAAGGATTTTGCTTACATCTACCTCAGAAGTATATGGAGATCCTCTCGTGCATCCACAACCAGAAAGCTATTGGGGAAATGTTAACCCTATTGGAGTTCGAAGTTGTTATGATGAGGGCAAGCGTGTTGCAGAAACTTTGATGTTTGATTATCATAGGCAGCATGGAATAGAAATACGCATTGCAAGAATCTTTAACACATATGGACCACGCATGAATATTGATGATGGGCGTGTGGTCAGCAACTTCATTGCTCAAGCACTTCGTGGTGAACCCTTAACTGTCCAAGTTCCAGGAACTCAAACTCGCAGTTTCTGCTATGTCTCTGACATGGTTGATGGACTTATACGTCTAATGGAAGGGGAAAACACTGGTCCAATCAACATTGGGAACCCAGGTTGTATCACAACTGAGTCGTTTGATACAACTGAGTCGTCTGATTTTTCTGCCAGAGAATTTACAATGATTGAACTTGCCGAGAATGTCAAAGAGTCTGGTCATATTTTAACTGCAAGATTTAAACAACAGTTTGAACCCAGGAATTCTCTGATAGCGAATTATGAATATGTTTTCCTTATTAATCCAGCAGTGGAGATAAAGATGGTTGAGAACACTCCTGATGATCCTCGTCAGAGAAAACCAGACATAACAAAAGCAAAGGAATTGCTGGGATGGGAACCAAAGGTCAAGTTGCGAGATGGCCTTCCTCTTATGGAAGAGGATTTCCGTCTGAGGCTTGGAGTTCCTAAGAAAAACTAA 1827 0.4477 MTIKLLVAWWCMKKLTLVVDEERRGYTVLKEEEGMLYSVTARLEEKQEEVYLVTPSSYPVIANEKRALMTVELQLWTKVDDAAFEGVSWKPEGGRHNEHEISLVVVDDAARTKVLVNDGGSSRWMMQRGGDEGNEMELDVHASTRGRGAAEGDADTGDEIGLLVTNTVEQMMEAMRVPLYFEKYEVHGDMRHVPEEVLDSIRKNKVCLKDGSRTPMVGFLTMATNSSNGATKQPPMPSPLRFSKFFQSNMRILVTGGAGFIGSHLVDRLMENEKNEVVVADNFFTGSKDNLKKWIGHPRFELIRHDVTEQLLIEVDQIYHLACPASPIFYKYNPVKTIKTNVIGTLNMLGLAKRVGARILLTSTSEVYGDPLVHPQPESYWGNVNPIGVRSCYDEGKRVAETLMFDYHRQHGIEIRIARIFNTYGPRMNIDDGRVVSNFIAQALRGEPLTVQVPGTQTRSFCYVSDMVDGLIRLMEGENTGPINIGNPGCITTESFDTTESSDFSAREFTMIELAENVKESGHILTARFKQQFEPRNSLIANYEYVFLINPAVEIKMVENTPDDPRQRKPDITKAKELLGWEPKVKLRDGLPLMEEDFRLRLGVPKKN 608
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02066 608 CDD UGD_SDR_e 250 599 - -
Vimu5g02066 608 PANTHER UDP-GLUCURONIC ACID DECARBOXYLASE-RELATED 224 603 IPR044516 GO:0042732|GO:0048040|GO:0070403
Vimu5g02066 608 SUPERFAMILY NAD(P)-binding Rossmann-fold domains 245 599 IPR036291 -
Vimu5g02066 608 Gene3D - 249 600 - -
Vimu5g02066 608 Pfam GDP-mannose 4,6 dehydratase 253 592 IPR016040 -
Vimu5g02066 608 Gene3D Isopropylmalate Dehydrogenase 156 234 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02066 Vimu-Chr5 32427549 32435885 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu5g02066 247 487 Miscellaneous Gene Families AT4G12250 25.092 1.43e-12 68.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02066 K08678 - gmx:100819843 658.677
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02066 5 32427549 32435885 Vimu4g00526 4 3835149 3837879 PCT