Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00450 ATGGCTTTTGTGTTTGCTTTTGTTGCAATTGTGCTGTGGGGTTGCGCTGAGTGTAAAGAGTGCACAAACAATATTGCTCAATCACATACTTACCGTTACCAGATATTGACATCCACGAATGAATCTTGGAACATAATCTCGCATTATAAATTGGCTCCAAAGGATGACCATGACCACGTTTTGGCTGATTTGCTACCAAGGAAGTTGTTGAAAGAGGAACACCAACATGATTGGGATGCGATCTTGAGAAAAACTAAGAAAGTGAGTGTCTTGAAGCCACCCCATCAACGCCAAGATTTTCTGAAAGAAGTGTCTCTGCATGATGTGAGATTGCATGAGGGCTCAATCCATGGTCGGGCACAACAGACAAACTTAGAGTATCTGTTGATGTTGGATGTGGACAGGTTACTCTGGAGCTTTAGGAAGACTGCTGGTCTTCCAACTCCTGGAACACCATATGGAGGATGGGAAGATCCAAAAATAGAGCTTCGAGGTCATTTTGTTGGGCACTACTTGAGTGCATCAGCTTTAATGTGGGCCAGCACACATAATGATATCTTGAAGAAGAAAATGACAGCCATTGTGGCCAATCTCTCAATCTGTCAAGAGAAAATTGGTACAGGGTATCTCTCTGCATTTCCATCTGAATTTTTTGACCGATTTGAAGCTACTGAGCATGTTTGGGCTCCCTATTACACCATTCACAAGATATTGGCTGGCCTTCTGGATCAACATTCTATAGCTAAAAATCCTCTAGCTCTAAATATGGTGAAATGGATGGTAGATTACTTTTTCAACAGAGTGCAGAATGTTATAACAAAATTTAGTATAAGTAGACACTATCAATCACTGAATGAGGAAACTGGAGGCATGAATGATGTCCTTTACAAACTATACAGCATAACAGCTAATGATATAGCTAATTTTCATGCTAACACGCATATCCCAGTGGTTGTTGGATCTCAAATGCGGTATGAAGTCACTGGTGATCCACTTTATAAGGAAATAGGAACATTCTTTATGGATATTGTTAACTCTTCTCATACTTATGCAACTGGAGGGACATCAGTCGATGAATTCTGGAGTGATCCAAAGAGAATTGGAGACACCCTAGAATCAACCGACAATGAGGAATCATGCACAACTTACAATATGTTGAAGGTTTCACGACACCTGTTCAGATGGACCAAAAAGGTATCATATGCAGATTATTACGAGCGTGCCTTAACAAATGGTGTGTTAAGCATTCAAAGAGGAACAGAACCTGGAGTGATGATATACATGCTTCCTCAAGGTCGCGGGGTTTCCAAGGCTAAAGCTAGCCTTGGTTGGGGAACAAAGTTTGACAGTTTCTGGTGCTGCTATGGAACAGGAATTGAATCATTCTCAAAGCTGGGAGATTCCATCTATTTTGAAGAGGGAGGGAAAAATCCTACTCTTTACATTATCCAGTACACATCAAGCTTCTTCAATTGGAAGTCTGGGCAAATTATTGTTAATCAGACAGTTGTTCCAGCTGTTTCATGGGATCCTTTCCTACGAGTGACATTTACATTTTCTCTAGCTAAGAAAACTGGTGCTTTGTCTACACTTAACTTCAGACTACCAACTTGGACACATAAGGATGGTGCAAAGGGTGTTTTGAATAATGAGTCTTTATCTCTGCCAACCCCAGGAAAATTTTTGTCCATCACCAGAAAATGGAATGCTGGTGACAAGCTAAGCCTTCAATTTCCCATTACCCTAAGAACCGAGGCCATAAAAGATGACAGGTCTCAATATGCCTCTATTCAAGCAATTCTATATGGTCCTTATCTTCTTGCTGGTCACACCACTGGTGATTGGGACATCAAAGCTGCACCAAACGCATCTATAGAAGACTGGATCACTCCAATTCCAGCCAGCTACAACAGTCAGTTATTCTATTTTTCCCAAGCCTTTGCCAACTCAACTTATGTTTTCACAAACTCCAAGCATCCTTTGGCAATGCAAAAATTACCTGTGCCTGGAACTGATTTGGCTCTTCATGCAACTTTTAGAGTTATCCAAGGAAAATCTTCCACAAATTTCACCACATTGACAGATGCTATTGGTAAAACAATAATGCTAGAACCGTTTGATCATCCAGGAATGCGAGTGATTCACCAAGGAAGGGAACATCCTCTTACAGTAGTAGGCTCTTCCTCTGGTGGCCCCTCTTGTGCTTTTGTTGTGGTTCCAGGATTGGATGGACGAAAGGAAACCATATCTTTGGAATCCAAAAGCCATAATGGTTGCTTTGTGCATAGTGGTTTGCATTCTGGTAGAGGAGTGAAACTCAGTTGCAATTCTTCTTCTGATGCTACATTTAAAGAATCAGCAAGTTTTATTGCCAAAAGAGGAATAAGCAAATATGATCCTATCAGCTTTGTGGCCAAAGGAGTAAACAAGAATTTTCTTCTGGAGCCGTTATTGGCCTTCAGAGATGAGTCTTATACGGCTTATTTCAACATTAAAGGTTGA 2502 0.4085 MAFVFAFVAIVLWGCAECKECTNNIAQSHTYRYQILTSTNESWNIISHYKLAPKDDHDHVLADLLPRKLLKEEHQHDWDAILRKTKKVSVLKPPHQRQDFLKEVSLHDVRLHEGSIHGRAQQTNLEYLLMLDVDRLLWSFRKTAGLPTPGTPYGGWEDPKIELRGHFVGHYLSASALMWASTHNDILKKKMTAIVANLSICQEKIGTGYLSAFPSEFFDRFEATEHVWAPYYTIHKILAGLLDQHSIAKNPLALNMVKWMVDYFFNRVQNVITKFSISRHYQSLNEETGGMNDVLYKLYSITANDIANFHANTHIPVVVGSQMRYEVTGDPLYKEIGTFFMDIVNSSHTYATGGTSVDEFWSDPKRIGDTLESTDNEESCTTYNMLKVSRHLFRWTKKVSYADYYERALTNGVLSIQRGTEPGVMIYMLPQGRGVSKAKASLGWGTKFDSFWCCYGTGIESFSKLGDSIYFEEGGKNPTLYIIQYTSSFFNWKSGQIIVNQTVVPAVSWDPFLRVTFTFSLAKKTGALSTLNFRLPTWTHKDGAKGVLNNESLSLPTPGKFLSITRKWNAGDKLSLQFPITLRTEAIKDDRSQYASIQAILYGPYLLAGHTTGDWDIKAAPNASIEDWITPIPASYNSQLFYFSQAFANSTYVFTNSKHPLAMQKLPVPGTDLALHATFRVIQGKSSTNFTTLTDAIGKTIMLEPFDHPGMRVIHQGREHPLTVVGSSSGGPSCAFVVVPGLDGRKETISLESKSHNGCFVHSGLHSGRGVKLSCNSSSDATFKESASFIAKRGISKYDPISFVAKGVNKNFLLEPLLAFRDESYTAYFNIKG 833
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00450 833 SUPERFAMILY Six-hairpin glycosidases 164 434 IPR008928 GO:0005975
Vimu4g00450 833 Gene3D - 694 818 - -
Vimu4g00450 833 PANTHER PROLINE-TRNA LIGASE (DUF1680) 16 831 - -
Vimu4g00450 833 Pfam Beta-L-arabinofuranosidase, GH127 305 608 IPR012878 -
Vimu4g00450 833 Pfam Beta-L-arabinofuranosidase, GH127 108 304 IPR012878 -
Vimu4g00450 833 SUPERFAMILY AbfB domain 702 814 IPR036195 GO:0046373|GO:0046556
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00450 Vimu-Chr4 3259624 3265271 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00450 K09955 - gmx:100791803 1235.71
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00450 4 3259624 3265271 Vimu4g00450 4 3259624 3265271 ECH
Vimu4g00450 4 3259624 3265271 Vimu5g02192 5 33228762 33229655 PCT
Vimu5g02194 5 33236962 33237693 Vimu4g00450 4 3259624 3265271 PCT