Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu5g02194 ATGCTGAAGATGAAGGCTTTTGTGTCTGTGTTTGTCGTGCTGGTGTTGTGCAGTTGTGCTGCTGCTATTAAAGAATGTACAAACATTCCTACGCAATCACATACCTTCACGCATCAGCTATTGTCGTCCAAGAATGAAACGTGGAAGGAAGAGGTGATGTCTCACTACCATTTGACGCCAACGGATGAATCTGCGTGGGCTGATATGCTGCCGAGGAAGTTCTTGTCGGAACGACAACAACATGATTGGGCGGTTATGTATAAGAATATTAAGAACATGGGTGTGTTCAAGTCACCCGAAGGTTTTCTGAAAGAAGTGCCTCTTGAGGATGTGAGGTTGCATCAGAATTCCATCCATGGAACAGCACAGCGAACAAACTTGGAGTATCTGTTGATGCTTGATGTCGACAGGTTGATTTGGAGCTTCAGGAAGACAGCGGGTTTACCCACGCCTGGTACTCCCTATGGAGGCTGGGAAGATCCCAAAGAAGAACTCAGGGGTCATTTTGTTGGTTAG 516 0.4632 MLKMKAFVSVFVVLVLCSCAAAIKECTNIPTQSHTFTHQLLSSKNETWKEEVMSHYHLTPTDESAWADMLPRKFLSERQQHDWAVMYKNIKNMGVFKSPEGFLKEVPLEDVRLHQNSIHGTAQRTNLEYLLMLDVDRLIWSFRKTAGLPTPGTPYGGWEDPKEELRGHFVG 171
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu5g02194 171 ProSiteProfiles Prokaryotic membrane lipoprotein lipid attachment site profile. 1 19 - -
Vimu5g02194 171 Pfam Beta-L-arabinofuranosidase, GH127 110 171 IPR012878 -
Vimu5g02194 171 PANTHER PROLINE-TRNA LIGASE (DUF1680) 22 171 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu5g02194 Vimu-Chr5 33236962 33237693 Proximal
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu5g02194 K09955 - gmx:100781521 275.018
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu5g02194 5 33236962 33237693 Vimu4g00450 4 3259624 3265271 PCT