Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00363 ATGTCGGCAATTCAAAACAAGAGATTGTTCATACTTGATCATCACGACTCAATCATGCCATATTTAAGGCGAATAAATGCAACATCCAACAAGGCTTATGCCACCAGAACCATCCTTTTCCTGAAAAACGACCGAACTTTAAGGCCACTTGCCATAGAACTGAGTTTGCCACATCCCGGGGATGATAAATCAGGTGTTGTTAGTCAAGTTTTTCTGCCTGCAGATGAAGTTATTGAGCCATTTGTCATAGCAACAAACAGGCATCTCAGTGTTGTTCATCCTATATATAAACTCCTGCACCCTCACTATCGTGACACCATGAACATAAATGCCCTTGCTCGGGGATCTCTTGTCAATGACGGTGGAATTATAGAGAAAACCTTTTTATGGGGAAGGTATTCTATGGAAATGTCTGCTACGATTTACAAGGATTGGGTTTTTACAGATCAAGCATTGCCAGCTGATCTTATAAAAAGAGGAATAGCAACCGAGGATCCAGAGTGCCCTCGTGGTCTTCGTCTCTTCATAGAGGACTACCCTTATGCTGTTGATGGACTTGAGATATGGGATGCTATCAAGACATGGGTTCATGAATATGTTTTCTTGTACTACAAATCAGATGAGACACTGAAAGAAGATCCTGAGCTCCAAGCTTGGTGGAAAGAACTGGTAGAGGTGGGTCATGGTGACAAGAAAAACGAGCCATGGTGGCCTAAGATGCAGACTCGTGAAGAGCTGGTTGAAGCTTGCAGTATTGTGATATGGACAGCTTCAGCACTGCATGCAGCTGTTAATTTTGGACAATACCCTTATGGAGGTTTGATCTTAAACCGTCCAACTATCAGTAGGCGATTCATGCCTGAAAAAGGTTCTCCTGAATATGAGGAGCTGAAGAAGAGCCCTCAGAAGGCTCTCTTGAGGACCATTACACCAAAGTTTCAGACCCTTATTGACCTTTCTGTGATAGAAATATTGTCAAGGCATGCTTCTGACGAGATCTATCTGGGTGAAAGGGACAATCCAAATTGGACATCTGATACAAGGGCCTTGGAGGCTTTCAAAAGATTTGGGAAGAAGCTCTCAGAAATTGAGAAGAAACTCTCAGAGAGAAACAATGATGAGAAACTGAGAAACCGCCATGGACCAGTTCAGATGCCTTATACTCTGCTCTTCCCTTCAAGTGATGAAGGCTTAACTTTCAGAGGAATTCCCAACAGTATCTCCATCTGA 1230 0.4293 MSAIQNKRLFILDHHDSIMPYLRRINATSNKAYATRTILFLKNDRTLRPLAIELSLPHPGDDKSGVVSQVFLPADEVIEPFVIATNRHLSVVHPIYKLLHPHYRDTMNINALARGSLVNDGGIIEKTFLWGRYSMEMSATIYKDWVFTDQALPADLIKRGIATEDPECPRGLRLFIEDYPYAVDGLEIWDAIKTWVHEYVFLYYKSDETLKEDPELQAWWKELVEVGHGDKKNEPWWPKMQTREELVEACSIVIWTASALHAAVNFGQYPYGGLILNRPTISRRFMPEKGSPEYEELKKSPQKALLRTITPKFQTLIDLSVIEILSRHASDEIYLGERDNPNWTSDTRALEAFKRFGKKLSEIEKKLSERNNDEKLRNRHGPVQMPYTLLFPSSDEGLTFRGIPNSISI 409
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00363 409 PANTHER LIPOXYGENASE 3 74 IPR000907 GO:0016702|GO:0034440|GO:0046872
Vimu4g00363 409 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 1 409 IPR013819 GO:0016702|GO:0046872
Vimu4g00363 409 ProSitePatterns Lipoxygenases iron-binding region signature 2. 92 102 IPR020834 GO:0016702|GO:0046872
Vimu4g00363 409 Gene3D - 1 71 - -
Vimu4g00363 409 SUPERFAMILY Lipoxigenase 3 409 IPR036226 -
Vimu4g00363 409 Gene3D - 72 408 - -
Vimu4g00363 409 FunFam Lipoxygenase 61 408 - -
Vimu4g00363 409 PRINTS Plant lipoxygenase signature 33 57 IPR001246 GO:0016491
Vimu4g00363 409 PRINTS Plant lipoxygenase signature 322 336 IPR001246 GO:0016491
Vimu4g00363 409 Pfam Lipoxygenase 2 76 IPR013819 GO:0016702|GO:0046872
Vimu4g00363 409 Pfam Lipoxygenase 77 392 IPR013819 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00363 Vimu-Chr4 2611161 2613422 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00363 3 409 Acyl Lipid Metabolism Gene Families AT1G55020 61.136 0.0 569
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00363 K15718 - gmx:547869 740.339
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00363 4 2611161 2613422 Vimu11g03010 11 49731045 49734760 PCT
Vimu11g03008 11 49720906 49721655 Vimu4g00363 4 2611161 2613422 PCT