Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03008 ATGGCTATTGAGGATTCATCTTCTCCGAACGGCCTCCGTCTTGTGATAAAGGACTACCCTTATGCTGTGGATGGATTGGAGATATGGAATGCTATCAAGACATGGGTCAAAGAATATGTGTCCTTGTACTATGTGACAGATGATATGGTTAAAAAAGACCGTGAACTCCAAGGTTGGTGGAGAGAAGTTGTTGAGAAGGGTCATGGCGATTTAAAAGAAAAGTCGTGGTGGCCTAAAGTACACACTCGTGAAGAGCTTATTCAATCTTGTACTATCATTATATGGGTTGCTTCAGCTCTTCATGCAGCGGTTAATTTCGGACAATATCCTTATGGTGGATTTATCCTCAATCGTCCAACTCTTAGCAGAAGACTGATACCGGAAAAAGGAACAGCAGAATATGATGAGATGGAGAAGAATCCTGAAAAGGCTTATTTGAGAACAATTACGCCTAAGTATCAAACTCTTGTTGACCTTTCAGTGATAGAAATATTGTCGAGACATGCTTCTGATGAGGTCTACCTTGGACAGAGGGACAATCCATATTGGACATCTAATCCAAAGGCAATAGAAGCCTTTAAAAGGTTCGGAGAAAAGTTAGCAGAGATTGAGAAAACAATTTCAGAAAGAAACCATGATCCAAATCTTAAAAATCGAACTGGGCCAGTTCAATTGCCTTATACTGTTCTTCTTCCCAACAGTGATACGGGTTTAACTTTTAGAGGAATTCCAAACAGTATCTCTATCTAA 750 0.3987 MAIEDSSSPNGLRLVIKDYPYAVDGLEIWNAIKTWVKEYVSLYYVTDDMVKKDRELQGWWREVVEKGHGDLKEKSWWPKVHTREELIQSCTIIIWVASALHAAVNFGQYPYGGFILNRPTLSRRLIPEKGTAEYDEMEKNPEKAYLRTITPKYQTLVDLSVIEILSRHASDEVYLGQRDNPYWTSNPKAIEAFKRFGEKLAEIEKTISERNHDPNLKNRTGPVQLPYTVLLPNSDTGLTFRGIPNSISI 249
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03008 249 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 1 249 IPR013819 GO:0016702|GO:0046872
Vimu11g03008 249 Pfam Lipoxygenase 1 232 IPR013819 GO:0016702|GO:0046872
Vimu11g03008 249 Gene3D - 1 248 - -
Vimu11g03008 249 SUPERFAMILY Lipoxigenase 1 249 IPR036226 -
Vimu11g03008 249 PANTHER LIPOXYGENASE 1 249 IPR000907 GO:0016702|GO:0034440|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03008 Vimu-Chr11 49720906 49721655 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03008 1 249 Acyl Lipid Metabolism Gene Families AT1G55020 62.249 1.80e-114 346
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03008 K15718 - gmx:547694 451.825
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03008 11 49720906 49721655 Vimu4g00363 4 2611161 2613422 PCT