Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03010 ATGTTTTCAGGGATTCAAGGACTGTTGAACAGAAGCAAGAAGTTGAAGGGAACTGTGGTGTTGATGCATAAGAACGTGCTGGATATCAACGCCATTAAGTCAGCCAAAAGTGCCGCCGGTATCCTCCGCGGCGCCGCCGGTGTCGTCAGTGATCTGGTGGGAAACTCAGTCGACACTCTCACTTGCTGTGTTGGACGATCTGTTGCTCTCTGGTTGATCAGCGCCACCGCTGCCGATGGAAATGGACATGGAAAAGTGGGAAAGAAGACATATCTGGAAGGAATTATTACCTCGATGCCAACATTGGGAGCTGGACAATGTGCATATGATATTCATTTTGAATGGGACAGTGACATGGGAATTCCTGGAGCCTTTTTAATACAAAATCATATGCAACTTGAGTTCTTCCTAGTCAGTTTAACTCTTGAAGATATTCCTAATCATGGAACCATGCACTTTTCTTGTAACTCATGGCTTTACAACTATAAAAATTACGAAAAGGATCGTATTTTCTTTGCCAACGAGACATATATTCCAAGTGAAACACCAGGACCACTAGTGAGTTACAGACAAGCAGAATTTCAGACTCTAAGAGGAAATGGAACAGGAAAACGTAAGGAGTGTGACAGAATTTATGATTACGATGTTTACAATGATTTGGGCAAACCCGACAGCAGTGAAAACCTTGCTCGCCCAGTTCTTGGAGGATCTTTCACTTATCCCTACCCTCGAAGAGGAAGAACTGGTAGAAAACCTACCAAAAAAGATCCCAACAGTGAGAAACTGAGCGATAATTTTTACGTTCCGAGAGATGAAAATTTCGGTCATTTGAAGTCATCTGATTTCCTTACTTATGCGGTAAAAGCTGTATCTCGAAACTTCTTGCCACTGCTCAGATCTTCATTTGATCTGAATTTCACACCAAATGAGTTTGATAGCTTCGAAGATGTACGTCAACTATGTGAAGGTGGAATTAAACTGCATACAGATCTACTCTGCAAAATTAGCCCTTTACCTGTGCTCAAAGAAATCTTTCGCACAGATGGTGAAAACGTCCTCCAGTTTTCAGTGCCTCATGTAATCAGAGTTAGTAAATCTGCATGGATGACCGATGAAGAATTTGCAAGAGAGATGATTGCAGGTGTAAATCCTTGCTTGATTACCCGTCTAAAAGAGTTTCCACCTCAAAGCAAGTTGGATCCCTCCATCTATGGTGATCAATCCAGTAAAATAACTAAGCAACACTTGGAGATTAACCTTGAAGGGTTCACAGTAGATAAGGCAATTGAAGGCAAGAGACTGTTCATATTAGATCATCATGATGTGTTTATGCCGTTTTTGACAAGGCTAAACGAATTAAAAAATACAAAGGCTTATGCCACGAGGACAATCCTTTTCTTGAAAGATGATGGGACCTTAAAGCCATTGGTCATCGAATTAAGCTTGCCAAATTCAGTTGAACAACGACGTGGTTCCATCAGTAAAGTGATATTGCCCGCAAACCTTGGAGTTGAAAGTACAATTTGGCTGTTAGCCAAGGCTCATGTTATTGTGAATGATTCCTGCTATCATCAGCTCATAAGCCACTGGTTGAATACTCATGCTGTAATCGAACCCTTTGTCATATCAACAAACAGAAATCTCAGTGTTCTTCACCCTATTTATAAACTTCTATTTCCTCATTATCGTGACACAATGAATATCAATGCACTTGCTCGAGAATCACTAATCAATGCTGATGGCGTTATAGAGCAATCCTTTCTGGGTGGAAAGTATGCAGTGGAGATATCTTCGGCAGCTTACAAAAATTGGGTGTTTCCTGAGCAAGCCTTACCTACTGATCTTATAAAGAGAGGCATGGCTATTAAGGATTCATCTTCTCCAAATGGTCTTAGTCTTGTGATAAAGGACTACCCGTATGCTGTTGATGGATTAGAGATATGGAACGCTATCGAGACATGGGTCCGTGAATATGTCTTGTTGTATTATGTTACAGATGATGCAGTTAAAAAGGATATTGAACTTGAAGCATGGTGGAAAGAAGTTGTTGAAAAAGGTCATGGTGACTTAAAAGATAAGGCATGGTGGCCTAAATTACACACTCGTGAAGAGCTGATTCGATCTTGTAGTACCATCATATGGATTGCTTCAGCTTTTCATGCAGCAGTTAATTTTGGACAATATCCTTATGGTGGCTTTATCCTGAATCGTCCAACTCTAAGCAGAAGATTGATTCCAGAAAAGGGAACTCCAGAATATGAAGAGATGGCAAAGAATCCTCAAAAGGCTTATTTGAGAACGATTACACCAAAGTATCAGGCTCTTGTTGACCTTTCAGTGATAGAGATATTATCAAGACATGCTTCTGATGAGGTGTACCTTGGACAGAGGGACAATCCAAATTGGACCTCCGATTCAAGGGCTATAGAAGCCTTTAAAAAGTTTGGAAAAAGGCTAAAAGAGATTGAGAGAAAAATCTCAGAAAGGAATCATGATCCAAATCTTAAAAATCGAACTGGACCAGCTGAATTGCCTTACACTTTGCTTCTTCCTACTAGTGAAACGGGGTTGACTTTTAGAGGAATTCCCAACAGCATCTCTATCTGA 2607 0.4062 MFSGIQGLLNRSKKLKGTVVLMHKNVLDINAIKSAKSAAGILRGAAGVVSDLVGNSVDTLTCCVGRSVALWLISATAADGNGHGKVGKKTYLEGIITSMPTLGAGQCAYDIHFEWDSDMGIPGAFLIQNHMQLEFFLVSLTLEDIPNHGTMHFSCNSWLYNYKNYEKDRIFFANETYIPSETPGPLVSYRQAEFQTLRGNGTGKRKECDRIYDYDVYNDLGKPDSSENLARPVLGGSFTYPYPRRGRTGRKPTKKDPNSEKLSDNFYVPRDENFGHLKSSDFLTYAVKAVSRNFLPLLRSSFDLNFTPNEFDSFEDVRQLCEGGIKLHTDLLCKISPLPVLKEIFRTDGENVLQFSVPHVIRVSKSAWMTDEEFAREMIAGVNPCLITRLKEFPPQSKLDPSIYGDQSSKITKQHLEINLEGFTVDKAIEGKRLFILDHHDVFMPFLTRLNELKNTKAYATRTILFLKDDGTLKPLVIELSLPNSVEQRRGSISKVILPANLGVESTIWLLAKAHVIVNDSCYHQLISHWLNTHAVIEPFVISTNRNLSVLHPIYKLLFPHYRDTMNINALARESLINADGVIEQSFLGGKYAVEISSAAYKNWVFPEQALPTDLIKRGMAIKDSSSPNGLSLVIKDYPYAVDGLEIWNAIETWVREYVLLYYVTDDAVKKDIELEAWWKEVVEKGHGDLKDKAWWPKLHTREELIRSCSTIIWIASAFHAAVNFGQYPYGGFILNRPTLSRRLIPEKGTPEYEEMAKNPQKAYLRTITPKYQALVDLSVIEILSRHASDEVYLGQRDNPNWTSDSRAIEAFKKFGKRLKEIERKISERNHDPNLKNRTGPAELPYTLLLPTSETGLTFRGIPNSISI 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03010 868 PANTHER LIPOXYGENASE 13 868 IPR000907 GO:0016702|GO:0034440|GO:0046872
Vimu11g03010 868 FunFam Lipoxygenase 503 867 - -
Vimu11g03010 868 Gene3D - 178 277 - -
Vimu11g03010 868 ProSiteProfiles PLAT domain profile. 45 173 IPR001024 GO:0005515
Vimu11g03010 868 SMART LH2_4 13 174 IPR001024 GO:0005515
Vimu11g03010 868 CDD PLAT_LH2 13 174 IPR042057 -
Vimu11g03010 868 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 176 868 IPR013819 GO:0016702|GO:0046872
Vimu11g03010 868 Gene3D - 278 366 IPR027433 -
Vimu11g03010 868 Pfam PLAT/LH2 domain 81 172 IPR001024 GO:0005515
Vimu11g03010 868 SUPERFAMILY Lipoxigenase 178 868 IPR036226 -
Vimu11g03010 868 MobiDBLite consensus disorder prediction 236 262 - -
Vimu11g03010 868 Gene3D PLAT/LH2 domain 4 177 - -
Vimu11g03010 868 Gene3D - 502 867 - -
Vimu11g03010 868 ProSitePatterns Lipoxygenases iron-binding region signature 2. 551 561 IPR020834 GO:0016702|GO:0046872
Vimu11g03010 868 FunFam Lipoxygenase 367 501 - -
Vimu11g03010 868 ProSitePatterns Lipoxygenases iron-binding region signature 1. 524 538 IPR020833 GO:0016702|GO:0046872
Vimu11g03010 868 PRINTS Plant lipoxygenase signature 308 329 IPR001246 GO:0016491
Vimu11g03010 868 PRINTS Plant lipoxygenase signature 781 795 IPR001246 GO:0016491
Vimu11g03010 868 PRINTS Plant lipoxygenase signature 459 483 IPR001246 GO:0016491
Vimu11g03010 868 PRINTS Plant lipoxygenase signature 392 411 IPR001246 GO:0016491
Vimu11g03010 868 PRINTS Plant lipoxygenase signature 208 224 IPR001246 GO:0016491
Vimu11g03010 868 PRINTS Plant lipoxygenase signature 241 260 IPR001246 GO:0016491
Vimu11g03010 868 PRINTS Plant lipoxygenase signature 353 369 IPR001246 GO:0016491
Vimu11g03010 868 PRINTS Plant lipoxygenase signature 169 190 IPR001246 GO:0016491
Vimu11g03010 868 PRINTS Plant lipoxygenase signature 143 161 IPR001246 GO:0016491
Vimu11g03010 868 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 13 177 IPR036392 GO:0005515
Vimu11g03010 868 Gene3D - 367 501 - -
Vimu11g03010 868 FunFam Lipoxygenase 178 277 - -
Vimu11g03010 868 Pfam Lipoxygenase 186 851 IPR013819 GO:0016702|GO:0046872
Vimu11g03010 868 PRINTS Lipoxygenase signature 506 523 IPR013819 GO:0016702|GO:0046872
Vimu11g03010 868 PRINTS Lipoxygenase signature 524 541 IPR013819 GO:0016702|GO:0046872
Vimu11g03010 868 PRINTS Lipoxygenase signature 544 564 IPR013819 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03010 Vimu-Chr11 49731045 49734760 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03010 1 868 Acyl Lipid Metabolism Gene Families AT1G55020 56.546 0.0 1009
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03010 K15718 - gmx:547694 1434.85
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00363 4 2611161 2613422 Vimu11g03010 11 49731045 49734760 PCT