Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00361 ATGTTCGGAATCCTGGGAGGCAAAGGTCAGAAGATAAAGGGGAAATTGGTGATTATGCGAAAGAATGTGTTGGATATCAACAGTCTGACAAGTGTTAAGGGTGTCGTCGGAACAGGAATCAACATCATCGGTGGTTTAGTTGATACTGTCACTGCTTTTGCTTCTCACATCTCCATTAAGCTCATTAGTGCTACCAAAGCTGATGGACAAGGGAATGGAAAGGTTGGAAAAGCTACATATTTGAGAGGACAAGTATCATTGCCAACGTTGGGAGCGGGAGAAGATGCATATGATGTTGAGTTTGACTGGGACAGTGATTTCGGAATTCCTGGCGCATTTTACATTGAAAACTTCATGCAAGTTGAATTTTATCTTAAGACCCTAACTCTCGAAGACATTCCCAACCATGGAACCATTCACTTTGTATGTAACTCTTGGGTTTACAATTCCAAAGTCTACAACACTGATCGTATTTTCTTTGCCAACAACACGTATCTTCCTGGCGAGACACCAGCCCCACTTGTGAAGTACAGAGAAGAAGAATTGAAGGTTGTAAGAGGCAATGGAACTGGAGAACGAAAGGAATGGGATAGAGTTTATGATTATGATGTCTACAATGACTTGGGCGACCCAGATAAAGGTGAAGCTCATGCTCGTCCTGTTCTTGGAGGTTCTACCTTGCCTTACCCTCGTAGAGGAAGAACTGGAAGACCCAAAACTAAAAAAGATCCTAACAGTGAGAAGCCCAGCGACTTTGTTTACCTTCCAAGAGACGAAGCGTTTGGTCACTTGAAGTCATCCGATTTTCTCACTTATGGATTGAAATCTGTCGTCCAAGATGTGTTGCCTGTATTGACTGATGCATTTGATGGAAATGTTTTGAGCCTTGAGTTTGATAATTTCGCTGAAGTGCGCAAGCTTTATGAAGGTGGAGTTACATTGCCCACAAACTTTCTTAGCAAGATCGCTCCTTTACCTGTCATTAAGGAAATTCTTCGAACTGATGGTGAACAGTTTCTAAAGTATCCACCACCTAAAGTCATGCAAGTGGATAAGTCTGCATGGATGACGGATGAAGAATTTGCAAGGGAAACCATTGCTGGTGTTAATCCTAATGTGATTAAGATTCTTGAGGAGTTTCCACCACGAAGCAAGCTAGATACTCAAGCCTACGGTGATCATACTTCCATTATAACAAAACAACATTTGGAGCCTAACTTGGGTGGGCTCACTGTTGAACAGGCTATCGGTAGCAAGAAGTTATTCATTTTGGATCACCATGACTATCTCATTCCATATTTGAGGAAAATAAATGAATCTACCACAAAGACTTATGCCACAAGAACCATATTTTTCTTGAAAAGCGATGGAACTTTGGCACCATTGGCCATCGAGTTAAGCAAGCCGCATCCTCAAGGCGACAACTATGGTCCTGTTAGTGAAGTCTATGTTCCTTCATACGAGGGTGTCGAAGCTTACATTTGGCTATTGGCAAAGGCTTATGTCATTGTGAATGACTCATGCTACCATCAACTTGTTAGCCACTGGCTAAACACTCATGCAGTGGTTGAACCATTCATCATAGCAACAAACAGGCAACTGAGTGTGCTTCACCCTGTTCACAAACTCTTGTTTCCCCACTATCGTGACACCATGAACATTAATTCACTTGCTCGCAAGGCCTTGGTCAATGAAAACGGTATTATAGAGAAAACATACTTATGGGGTAGATATGCTTTGGAACTGTCTGCTGTGATATATAAGGATTGGTCTTTCCACGATCAAGCATTACCTAATGATCTCCTCAAGAGAGGAGTTGCAGTTAAGGATTCATCTGCTCCCCACGGTATTAAGCTTTTGATTGAGGATTATCCTTATGCTTCTGATGGGCTGGAGATATGGGATGCCATCAAGTCGTGGGTGGCAGAGTATGTCGCATTCTACTACAAGTCAGATGAGGCAATTCAAAAAGACCCTGAACTTCAAGCTTGGTGGAAAGAACTTGTTCAAGTGGGTCACAGTGATTTGAAAGATAAGCCATGGTGGCCAAAGATGAATACTTCTGCAGATTTGATTGAAGTCTCTACTACCCTGATATGGATAGCTTCAGCTCTTCACGCTGCTGTTAACTTTGGACAATATCCATATGGTGGTTTGATCCTTAACAGGCCAACTATTAGCAGAAGATTCATGCCTGAAAAAGGGTCTGCTGAGTATGCTGCATTGGGTAAGAACCCTGAGAAGGAGTTTTTGAAAACTATTACCGGAAAGCAGGAGGCCCTTATTGACCTTACGATTATAGAGATCTTGTCAAGGCACACATCTGATGAGTTCTATCTTGGAGAGAGAGATGGTGGTGACTATTGGACTTCTGATGCTGGGCCATTAGAGGCCTTTAAGAGGTTTGGGAAGAAGCTTGCAGAGATTGAACAGAAGCTTGTACAGAAGAACAACAATGTGTCATTGAGAAACCGCACTGGACCGGCTAAAATGCCTTATACTCTGCTTTATCCTTCAAGTGAGGAAGGCTTGACTTTCAGAGGAATTCCCAACAGTATCTCCATCTAA 2568 0.4245 MFGILGGKGQKIKGKLVIMRKNVLDINSLTSVKGVVGTGINIIGGLVDTVTAFASHISIKLISATKADGQGNGKVGKATYLRGQVSLPTLGAGEDAYDVEFDWDSDFGIPGAFYIENFMQVEFYLKTLTLEDIPNHGTIHFVCNSWVYNSKVYNTDRIFFANNTYLPGETPAPLVKYREEELKVVRGNGTGERKEWDRVYDYDVYNDLGDPDKGEAHARPVLGGSTLPYPRRGRTGRPKTKKDPNSEKPSDFVYLPRDEAFGHLKSSDFLTYGLKSVVQDVLPVLTDAFDGNVLSLEFDNFAEVRKLYEGGVTLPTNFLSKIAPLPVIKEILRTDGEQFLKYPPPKVMQVDKSAWMTDEEFARETIAGVNPNVIKILEEFPPRSKLDTQAYGDHTSIITKQHLEPNLGGLTVEQAIGSKKLFILDHHDYLIPYLRKINESTTKTYATRTIFFLKSDGTLAPLAIELSKPHPQGDNYGPVSEVYVPSYEGVEAYIWLLAKAYVIVNDSCYHQLVSHWLNTHAVVEPFIIATNRQLSVLHPVHKLLFPHYRDTMNINSLARKALVNENGIIEKTYLWGRYALELSAVIYKDWSFHDQALPNDLLKRGVAVKDSSAPHGIKLLIEDYPYASDGLEIWDAIKSWVAEYVAFYYKSDEAIQKDPELQAWWKELVQVGHSDLKDKPWWPKMNTSADLIEVSTTLIWIASALHAAVNFGQYPYGGLILNRPTISRRFMPEKGSAEYAALGKNPEKEFLKTITGKQEALIDLTIIEILSRHTSDEFYLGERDGGDYWTSDAGPLEAFKRFGKKLAEIEQKLVQKNNNVSLRNRTGPAKMPYTLLYPSSEEGLTFRGIPNSISI 855
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00361 855 Gene3D - 265 353 IPR027433 -
Vimu4g00361 855 Gene3D PLAT/LH2 domain 2 165 - -
Vimu4g00361 855 SUPERFAMILY Lipoxigenase 167 855 IPR036226 -
Vimu4g00361 855 Pfam Lipoxygenase 174 838 IPR013819 GO:0016702|GO:0046872
Vimu4g00361 855 Gene3D - 354 487 - -
Vimu4g00361 855 PRINTS Lipoxygenase signature 530 550 IPR013819 GO:0016702|GO:0046872
Vimu4g00361 855 PRINTS Lipoxygenase signature 492 509 IPR013819 GO:0016702|GO:0046872
Vimu4g00361 855 PRINTS Lipoxygenase signature 510 527 IPR013819 GO:0016702|GO:0046872
Vimu4g00361 855 FunFam Lipoxygenase 354 487 - -
Vimu4g00361 855 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 9 165 IPR036392 GO:0005515
Vimu4g00361 855 ProSitePatterns Lipoxygenases iron-binding region signature 1. 510 524 IPR020833 GO:0016702|GO:0046872
Vimu4g00361 855 Gene3D - 488 854 - -
Vimu4g00361 855 Pfam PLAT/LH2 domain 66 160 IPR001024 GO:0005515
Vimu4g00361 855 SMART LH2_4 10 162 IPR001024 GO:0005515
Vimu4g00361 855 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 164 855 IPR013819 GO:0016702|GO:0046872
Vimu4g00361 855 PRINTS Plant lipoxygenase signature 196 212 IPR001246 GO:0016491
Vimu4g00361 855 PRINTS Plant lipoxygenase signature 379 398 IPR001246 GO:0016491
Vimu4g00361 855 PRINTS Plant lipoxygenase signature 767 781 IPR001246 GO:0016491
Vimu4g00361 855 PRINTS Plant lipoxygenase signature 157 178 IPR001246 GO:0016491
Vimu4g00361 855 PRINTS Plant lipoxygenase signature 228 247 IPR001246 GO:0016491
Vimu4g00361 855 PRINTS Plant lipoxygenase signature 295 316 IPR001246 GO:0016491
Vimu4g00361 855 PRINTS Plant lipoxygenase signature 131 149 IPR001246 GO:0016491
Vimu4g00361 855 PRINTS Plant lipoxygenase signature 445 469 IPR001246 GO:0016491
Vimu4g00361 855 PRINTS Plant lipoxygenase signature 340 356 IPR001246 GO:0016491
Vimu4g00361 855 FunFam Lipoxygenase 166 264 - -
Vimu4g00361 855 CDD PLAT_LH2 17 162 IPR042057 -
Vimu4g00361 855 FunFam Lipoxygenase 489 854 - -
Vimu4g00361 855 Gene3D - 166 264 - -
Vimu4g00361 855 ProSiteProfiles PLAT domain profile. 36 161 IPR001024 GO:0005515
Vimu4g00361 855 PANTHER LIPOXYGENASE 9 855 IPR000907 GO:0016702|GO:0034440|GO:0046872
Vimu4g00361 855 ProSitePatterns Lipoxygenases iron-binding region signature 2. 537 547 IPR020834 GO:0016702|GO:0046872
Vimu4g00361 855 MobiDBLite consensus disorder prediction 211 252 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00361 Vimu-Chr4 2588702 2592672 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00361 1 855 Acyl Lipid Metabolism Gene Families AT1G55020 55.859 0.0 983
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00361 K15718 - gmx:100803358 1562.74
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00361 4 2588702 2592672 Vimu11g02999 11 49592420 49596767 PCT
Vimu11g03003 11 49657187 49661497 Vimu4g00361 4 2588702 2592672 PCT