Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02999 ATGTCACGTCTCATAGGTGGCCTCTTTGACAATAGTCAGAAGATAAAGGGCACTGTGGTGTTGATGCCCAAGAACGTGTTGGACTTCAACGCCTTAACTTCCATTGGTAAAGGCAGTGTTACTGACACGGCCAAAGATATCTTTGGCACTGTCGTTAACATAGGTGGTAGTTTGATTGATGCTGCAACTGCCTTCGCAGGCAAAAATATTTCCTTGCAGTTGATCAGTGCTACTCAAGCTGATGCTAGTGGAAAAGGAAAAGTTGGAAGCAAAGCATATGTGGAAAAACATCTTCCGACCTTTCCAACGTTGGGAGCTCAGCAGCTAGCATTCCGTGTTTCCTTTGATTGGGATGCTAATTTTGGAATTCCAGGAGCATTTTACATCCAAAACTATACAACTGATGAGTTTTTCCTTGTCAGTGTTCTTCTTGAGGACATTCCAAACCATGGAACCATTCACTTTGTTTGTAACTCCTGGATTTACAACTTCAAGAAATACCAGAAAGATCGTATTTTCTTTGTGAATGATACATATCTTCCAGGTGCAACACCAGCTCCACTTCTCAAATACAGACAAGAAGAATTGGAGACTCTTAGAGGAGATGGAACTGGTAAACGCCAGGAACAAGATAGAATCTATGACTATGACGTGTATAATGACCTTGGAAACCCAGATGGTGGTGATCCTCGCCCAATCCTTGGAGGATCTATCATCCATCCTTACCCTCGCAGGGTTAGAACTGGTAGAGAACGAACCAGGACAGATCCCAACAGTGAGAAACCAGGCGCGATTTATGTTCCAAGAGATGAAAATTTTGGTCACTTGAAGTCATCAGATTTCATCATGTATGGAATAAAATCTTTATCTCAGGACGTGTTGCCCCTGTTAAAATCTGCAATTTTTGACTTAAGGATCACATCAAGTGAGTTTAAGAACTTCGAAGATGTGCGTAGTCTCTATGAGGGTGGAATTAAGCTGCCAACAGATTTTTTGAGCCAAATTAGCCCTGTACCTGCCCTCAAGGAACTCTTCCGCAGTGATGGTGAAAATGTCCTTCAATTTCCATTGCCTCATGTTATCCAAGTTAAAAGGTCTGAATGGATGACTGATGAAGAATTTGCAAGAGAAGTGATTGCTGGTGTCAATCCAAATGTATTTCGTCTTCTTCAGGAATTCCCACCAAAAAGTTCTCTTGATCCCTCTCTCTATGGTGATCAAACCAGTACCATAACAAGAGAACAGTTGGAGATTAACACGGATGGGGTCACAGTAGATGAGGCACTTAGCGCAAAGAGATTATTCATATTAGATTACCAAGATGCATTCTTTCCGTATTTGACGAGGATAAACAGCCTACCTGTTGCAAGAGCTTACGCCACCAGAACAATCTTATTCTTGAAAGATGATGGCACTTTGAAGCCACTTGCTATCGAATTAAGCAAGCCACATCCAGCTGGAGATAATTTGGGTCCTGTGAGCAAAGTTGTGTTGCCTGCAATTGATGGTGTTGACAGCACAATTTGGCTATTGGCCAAGGCTCATGTAGTTGTGAATGACTCTGGTTATCACCAGCTCATGAGTCATTGGTTAAATACTCATGCAGTGATGGAGCCTTTTGCCATAGCAACAAACAGACAACTCAGTGTGCTTCACCCCGTTTATAAACTTCTCTATCCTCACTATCGTGATACCATTAATATCAATGGACTTGCTAGGCAATCTTTGATTAATGCAGGTGGAATTATAGAGCAATCATTTTTGCCCGGAAAGTACTCTATTGAGATGTCTTCAGCAGTTTACAAGAACTGGGTTTTTACTGACCAAGCTTTACCAGCAGATCTTATCAAGAGAGGATTGGCTACTGAAGATCCTTCTGCTCCTCATGGTCTTCGTCTTGTGATAGAGGACTACCCTTATGCTGTTGATGGACTTGAAATTTGGGATGCTATAAAGTCATGGGTGAAAGAGTATGTGTCCTTGTATTACCCAACAGATGTGGCAATTCAACAAGATACTGAACTCCAAGCATGGTGGAAGGAAGTTGTGGAGAAGGGTCATGCAGACCTAAAAGATAAACCATGGTGGCCAAAAATGAAGACCATTGAAGATCTCATACAATCTTGCTCTATTATAATATGGACAGCTTCTGCTCTTCATTCAGCTGTTAACTTTGGACAGTATCCTTATGGAGGCTATATCCTGAACCGTCCAACTCTAAGCAGAAGGTTTATCCCTGAACCAGGAACTCCAGAATACGATGAGATGGTGGCGGATTATCAAAAGGCTTATCTGAAAACAATCACACCAAAGTACGAGACCCTCGTTGACCTTTCAGTGATAGAGATATTATCAAGGCATGCTTCTGATGAGATTTACCTTGGACAAAGGGATACTCCAAACTGGACAACTGATAACAAGGCATTACAAGCTTTCCAAAGGTTTGGAAGCAAACTGACTGAAATTGAGAGCAAAATCAATGCAAGGAACAGTGATCCAAGTCTGAGAAACCGACATGGACCAGTTCAGCTGCCATACACATTGCTCCATCGTTCAAGTGATGAAGGGTTAACTTTCAGAGGCATTCCCAACAGTATCTCTATCTAA 2607 0.4193 MSRLIGGLFDNSQKIKGTVVLMPKNVLDFNALTSIGKGSVTDTAKDIFGTVVNIGGSLIDAATAFAGKNISLQLISATQADASGKGKVGSKAYVEKHLPTFPTLGAQQLAFRVSFDWDANFGIPGAFYIQNYTTDEFFLVSVLLEDIPNHGTIHFVCNSWIYNFKKYQKDRIFFVNDTYLPGATPAPLLKYRQEELETLRGDGTGKRQEQDRIYDYDVYNDLGNPDGGDPRPILGGSIIHPYPRRVRTGRERTRTDPNSEKPGAIYVPRDENFGHLKSSDFIMYGIKSLSQDVLPLLKSAIFDLRITSSEFKNFEDVRSLYEGGIKLPTDFLSQISPVPALKELFRSDGENVLQFPLPHVIQVKRSEWMTDEEFAREVIAGVNPNVFRLLQEFPPKSSLDPSLYGDQTSTITREQLEINTDGVTVDEALSAKRLFILDYQDAFFPYLTRINSLPVARAYATRTILFLKDDGTLKPLAIELSKPHPAGDNLGPVSKVVLPAIDGVDSTIWLLAKAHVVVNDSGYHQLMSHWLNTHAVMEPFAIATNRQLSVLHPVYKLLYPHYRDTININGLARQSLINAGGIIEQSFLPGKYSIEMSSAVYKNWVFTDQALPADLIKRGLATEDPSAPHGLRLVIEDYPYAVDGLEIWDAIKSWVKEYVSLYYPTDVAIQQDTELQAWWKEVVEKGHADLKDKPWWPKMKTIEDLIQSCSIIIWTASALHSAVNFGQYPYGGYILNRPTLSRRFIPEPGTPEYDEMVADYQKAYLKTITPKYETLVDLSVIEILSRHASDEIYLGQRDTPNWTTDNKALQAFQRFGSKLTEIESKINARNSDPSLRNRHGPVQLPYTLLHRSSDEGLTFRGIPNSISI 868
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02999 868 PANTHER LIPOXYGENASE 12 868 IPR000907 GO:0016702|GO:0034440|GO:0046872
Vimu11g02999 868 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 178 868 IPR013819 GO:0016702|GO:0046872
Vimu11g02999 868 SUPERFAMILY Lipoxigenase 181 868 IPR036226 -
Vimu11g02999 868 Gene3D PLAT/LH2 domain 5 179 - -
Vimu11g02999 868 Gene3D - 502 867 - -
Vimu11g02999 868 FunFam Lipoxygenase 367 501 - -
Vimu11g02999 868 Pfam Lipoxygenase 188 850 IPR013819 GO:0016702|GO:0046872
Vimu11g02999 868 ProSitePatterns Lipoxygenases iron-binding region signature 2. 551 561 IPR020834 GO:0016702|GO:0046872
Vimu11g02999 868 CDD PLAT_LH2 14 176 IPR042057 -
Vimu11g02999 868 Gene3D - 277 365 IPR027433 -
Vimu11g02999 868 ProSitePatterns Lipoxygenases iron-binding region signature 1. 524 538 IPR020833 GO:0016702|GO:0046872
Vimu11g02999 868 Gene3D - 366 501 - -
Vimu11g02999 868 FunFam Lipoxygenase 503 867 - -
Vimu11g02999 868 Pfam PLAT/LH2 domain 77 174 IPR001024 GO:0005515
Vimu11g02999 868 SMART LH2_4 13 176 IPR001024 GO:0005515
Vimu11g02999 868 PRINTS Lipoxygenase signature 524 541 IPR013819 GO:0016702|GO:0046872
Vimu11g02999 868 PRINTS Lipoxygenase signature 544 564 IPR013819 GO:0016702|GO:0046872
Vimu11g02999 868 PRINTS Lipoxygenase signature 506 523 IPR013819 GO:0016702|GO:0046872
Vimu11g02999 868 PRINTS Plant lipoxygenase signature 171 192 IPR001246 GO:0016491
Vimu11g02999 868 PRINTS Plant lipoxygenase signature 459 483 IPR001246 GO:0016491
Vimu11g02999 868 PRINTS Plant lipoxygenase signature 241 260 IPR001246 GO:0016491
Vimu11g02999 868 PRINTS Plant lipoxygenase signature 392 411 IPR001246 GO:0016491
Vimu11g02999 868 PRINTS Plant lipoxygenase signature 210 226 IPR001246 GO:0016491
Vimu11g02999 868 PRINTS Plant lipoxygenase signature 308 329 IPR001246 GO:0016491
Vimu11g02999 868 PRINTS Plant lipoxygenase signature 353 369 IPR001246 GO:0016491
Vimu11g02999 868 PRINTS Plant lipoxygenase signature 145 163 IPR001246 GO:0016491
Vimu11g02999 868 PRINTS Plant lipoxygenase signature 781 795 IPR001246 GO:0016491
Vimu11g02999 868 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 13 179 IPR036392 GO:0005515
Vimu11g02999 868 Gene3D - 180 276 - -
Vimu11g02999 868 ProSiteProfiles PLAT domain profile. 46 175 IPR001024 GO:0005515
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02999 Vimu-Chr11 49592420 49596767 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02999 6 868 Acyl Lipid Metabolism Gene Families AT1G55020 55.822 0.0 992
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02999 K15718 - gmx:547835 1493.4
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00361 4 2588702 2592672 Vimu11g02999 11 49592420 49596767 PCT
Vimu11g02999 11 49592420 49596767 Vimu4g00360 4 2577211 2581342 PCT