Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g03003 ATGTTTGGTCTGTTCGACAAAAGCCAGAAGATAAAGGGCACTGTGGTGTTGATGCCAAAGAATGTGTTGGATGCTAACGACTTAAACGCAGTGCAGAACGGAGGTCTTGGTGGTGTTGTCTCTGGTTTATTCGGCGCCGTGAGCGACGTAGCAGGACAAGTAGTTGATTCTGCAACTGCCATCTTATCCCGTAATGTCTCCTTCAAGTTGATCAGTGCTACCTCCACTGATGCAAATGGAAACGGGAAAGTTGGCAAGGAAACGTATCTAGAGAAGCATATTCCAACGTTACCAACGTTTGGGGACAGACGAGATGCATTCGCTGTTAATTTTGAATGGGATGCTAATTTTGGAATTCCGGGAGCTTTTTACATCAGAAACTTTACGTATGATGAGTTCTTCCTCGTCAGTGTCACTCTTGATGACATTCCGAATCACGGAAGCATTCAGTTTGTCTGCAACTCGTGGATCTACAACTTCAAAAGCTACAAAAAGGATCGTATTTTCTTTGCTAACAATACATATGTTACAAGTGCAACACCAGCTCCACTAGTTAAGTACAGGAAAGAAGAGTTGGAGGTTTTAAGAGGAGATGGAACGGGAGAACGCAAGGAATGGGAAAGGATCTATGATTATGATGTGTATAATGATTTGGGCAACCCAGATAGTGATAAAAATCTTGCTCGTCCAGTGCTTGGAGGCTCCAGCACCCATCCCTACCCTCGTAGGGTTAGAACTGGTAGAAAACCCACCAAGAAAGATCCTAAAAGTGAGAAACTTGCAGCCGAGTTCTATATACCAAGAGATGAAAAATTCGGTCATCTGAAGTCCTCAGATTTCCTCTCATATAGTTTAAAATCCTTGTCTCAGACACTCTTACCTTCACTCGAAAACGTTGTAGACACAGATTTCACATGGAACGAGTTTGATAGCTTTCAAGAAGTGCGTGATTTGTATGAAGGTGGAATTAAGCTACCAACAGGTGTACTTAGTGCCATTAGTCCCTTACCAGTCTTCAAGGAACTTTTCCGATCTGATGGTGAAAATGTCCTTCAGCTTCCACCACCTCATGTTATCAGAGCAGTGAATAAATCTGCATGGATGACTGACGAGGAATTTGCAAGGGAAATGATTGCTGGTGTAAACCCAAATGTCATTCGTTGTCTTCAAGAGTTCCCTCCAAAAAGCAAGCTAGATCCCACTCTCTATGGTGATCAAACTAGTACTGTAACAAAAGAAAAGTTGGAGATTAACATGGGTGGGGTCACAGTGGAAGAGGCACTTGCTGCTAAGAGATTGTTCATATTAGATTACCAAGATGCATTCATTCCTTATTTGACGAGCATAAACAGTTTACCTACTGCAAAAGCTTATGCCACAAGAACGATCCTATTCTTGAAAGATGATGGCACTTTGAAGCCACTTGCTATCGAATTAAGCAAGCCACATCCAAGTGGAGATAATTTGGGTCCTGTGAGCAAAGTTGTGTTACCTGCGATTGATGGTGTTGACAGCACAATTTGGCTATTGGCCAAGGCTTATGTAATTGTAAATGACTCTGGTTATCATCAGCTCATGAGTCATTGGTTAAATACTCATGCAGTGATGGAGCCATTTGCAATAGCAACAAACAGGAATCTCAGTGTGATTCACCCCATTTATAAGCTTCTTTATCCTCACTATCGTGATACCATAAATATCAATGCACTTGCTAGACAAAACCTGATTAATGCAAATGGCATTATAGAACAATCATTTTTGCCTGGAAAGTATTCTATGGAGATGTCTTCAGCTGTTTACAAGAATTGGGTTTTCACTGAACAATCATTGCCAGCCGATCTCATCAAGAGAGGATTGGCTACTGAAGATCCTTCTGCTCCTCATGGCCTTCGTCTTGTGATAAAGGACTACCCTTATGCTGTTGATGGACTTGAAATATGGGATGCTATTAAGATATGGGTTGAAGAGTATGTGTCCTTGTATTACCCTACAGATGTGGCAGTTCAACAAGATACTGAACTTCAAGCATGGTGGAAGGAAGCTGTAGAAAAGGGTCATGCAGACTTAAAAGATAAACAATGGTGGCCTAAAATGACGACTCGTCAAGAGCTTATTCAATCAAGTTCTACTATCATTTGGACTGCTTCAGCTCTTCATGCAGCTGTTAATTTTGGACAATATCCTTACGGAGGTTTTATCCTGAACCGTCCAACTTTAAGCAGAAGATTCATTCCTGAGCCAGGAACCAAAGAATATGATGAGATGCTGAAGAGTCCTCACACTGCATATTTGAGAACCATTACACCTAAGCGTGAGGCCATTATTGATCTGACAGTGATAGAGATATTGTCAAGGCATGCTTCTGATGAGATCTACCTTGGGAAGAGAGATCATCCAAATTGGACATCTGATTCTAAGGCATTGGAAGCGTTCAAAAGGTTTGGAAGCAAGTTGACAGAGATTGAAGCAAAAATCACAGCAAGGAACAGTGATTCAGCCATGAAAAACCGATGTGGACCAGTTCAACTTCCATACACATTGCTCGTTCCTTCGAGCGAGGAAGGGTTGACTTTCAGAGGAATCCCTAACAGTATCTCTATCTAG 2604 0.4178 MFGLFDKSQKIKGTVVLMPKNVLDANDLNAVQNGGLGGVVSGLFGAVSDVAGQVVDSATAILSRNVSFKLISATSTDANGNGKVGKETYLEKHIPTLPTFGDRRDAFAVNFEWDANFGIPGAFYIRNFTYDEFFLVSVTLDDIPNHGSIQFVCNSWIYNFKSYKKDRIFFANNTYVTSATPAPLVKYRKEELEVLRGDGTGERKEWERIYDYDVYNDLGNPDSDKNLARPVLGGSSTHPYPRRVRTGRKPTKKDPKSEKLAAEFYIPRDEKFGHLKSSDFLSYSLKSLSQTLLPSLENVVDTDFTWNEFDSFQEVRDLYEGGIKLPTGVLSAISPLPVFKELFRSDGENVLQLPPPHVIRAVNKSAWMTDEEFAREMIAGVNPNVIRCLQEFPPKSKLDPTLYGDQTSTVTKEKLEINMGGVTVEEALAAKRLFILDYQDAFIPYLTSINSLPTAKAYATRTILFLKDDGTLKPLAIELSKPHPSGDNLGPVSKVVLPAIDGVDSTIWLLAKAYVIVNDSGYHQLMSHWLNTHAVMEPFAIATNRNLSVIHPIYKLLYPHYRDTININALARQNLINANGIIEQSFLPGKYSMEMSSAVYKNWVFTEQSLPADLIKRGLATEDPSAPHGLRLVIKDYPYAVDGLEIWDAIKIWVEEYVSLYYPTDVAVQQDTELQAWWKEAVEKGHADLKDKQWWPKMTTRQELIQSSSTIIWTASALHAAVNFGQYPYGGFILNRPTLSRRFIPEPGTKEYDEMLKSPHTAYLRTITPKREAIIDLTVIEILSRHASDEIYLGKRDHPNWTSDSKALEAFKRFGSKLTEIEAKITARNSDSAMKNRCGPVQLPYTLLVPSSEEGLTFRGIPNSISI 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g03003 867 ProSitePatterns Lipoxygenases iron-binding region signature 1. 523 537 IPR020833 GO:0016702|GO:0046872
Vimu11g03003 867 SUPERFAMILY Lipoxigenase 178 867 IPR036226 -
Vimu11g03003 867 Pfam PLAT/LH2 domain 75 170 IPR001024 GO:0005515
Vimu11g03003 867 Gene3D PLAT/LH2 domain 1 175 - -
Vimu11g03003 867 Gene3D - 176 275 - -
Vimu11g03003 867 FunFam Lipoxygenase 176 275 - -
Vimu11g03003 867 FunFam Lipoxygenase 502 866 - -
Vimu11g03003 867 FunFam Lipoxygenase 366 500 - -
Vimu11g03003 867 Gene3D - 366 500 - -
Vimu11g03003 867 Gene3D - 276 365 IPR027433 -
Vimu11g03003 867 MobiDBLite consensus disorder prediction 221 257 - -
Vimu11g03003 867 Pfam Lipoxygenase 184 850 IPR013819 GO:0016702|GO:0046872
Vimu11g03003 867 PRINTS Lipoxygenase signature 543 563 IPR013819 GO:0016702|GO:0046872
Vimu11g03003 867 PRINTS Lipoxygenase signature 505 522 IPR013819 GO:0016702|GO:0046872
Vimu11g03003 867 PRINTS Lipoxygenase signature 523 540 IPR013819 GO:0016702|GO:0046872
Vimu11g03003 867 ProSiteProfiles PLAT domain profile. 43 171 IPR001024 GO:0005515
Vimu11g03003 867 SMART LH2_4 9 172 IPR001024 GO:0005515
Vimu11g03003 867 CDD PLAT_LH2 10 172 IPR042057 -
Vimu11g03003 867 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 9 175 IPR036392 GO:0005515
Vimu11g03003 867 Gene3D - 501 866 - -
Vimu11g03003 867 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 174 867 IPR013819 GO:0016702|GO:0046872
Vimu11g03003 867 PRINTS Plant lipoxygenase signature 167 188 IPR001246 GO:0016491
Vimu11g03003 867 PRINTS Plant lipoxygenase signature 141 159 IPR001246 GO:0016491
Vimu11g03003 867 PRINTS Plant lipoxygenase signature 239 258 IPR001246 GO:0016491
Vimu11g03003 867 PRINTS Plant lipoxygenase signature 351 367 IPR001246 GO:0016491
Vimu11g03003 867 PRINTS Plant lipoxygenase signature 306 327 IPR001246 GO:0016491
Vimu11g03003 867 PRINTS Plant lipoxygenase signature 391 410 IPR001246 GO:0016491
Vimu11g03003 867 PRINTS Plant lipoxygenase signature 780 794 IPR001246 GO:0016491
Vimu11g03003 867 PRINTS Plant lipoxygenase signature 206 222 IPR001246 GO:0016491
Vimu11g03003 867 PRINTS Plant lipoxygenase signature 458 482 IPR001246 GO:0016491
Vimu11g03003 867 PANTHER LIPOXYGENASE 8 867 IPR000907 GO:0016702|GO:0034440|GO:0046872
Vimu11g03003 867 ProSitePatterns Lipoxygenases iron-binding region signature 2. 550 560 IPR020834 GO:0016702|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g03003 Vimu-Chr11 49657187 49661497 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g03003 8 867 Acyl Lipid Metabolism Gene Families AT1G55020 55.390 0.0 983
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g03003 K15718 - gmx:100781402 1508.43
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g03003 11 49657187 49661497 Vimu4g00361 4 2588702 2592672 PCT