Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00360 ATGGCTGAATCAAAAGAAGTTGAAAAGATGTTGGGAGGAATTTTCGGAGGAAACAAGCAGAAGATAAAGGGTACTGTGGTGCTTATGCGAAAGAATGTCTTGGACATTAACAGCATCCTCAACCCTGCCAGCGTCATTGACAACGTTTTCGATTTGGCCGGCAGTCTCGTCGACGCCGTTACTGCTTTCGCCACCTCCATCTCCATCCAGCTCATCAGTTCCACCAAGGCTGATGGACAAGGGAAAGGAAAAGTTGGAACTGCTACAAAGTTAAGAGGGCAGATATCATTGCCAACGTTGGGAGCGAGTGAAGAAGCATACGATGTTAATTTTGAATGGGATAGTGACTTCGGAATTCCTGGCGCGTTTTACATTAAGAACTTCATGCAGAATGAGTTCTACCTCAAATCTCTCACTCTCGAAGACATTCCTAACCATGGAACCATTCACTTCGTCTGCAACTCTTGGGTTTACAATGATAATAAATACAAAACTCCTCGTATTTTCTTTGCCAACAACACGTATCTTCCTGGCGAGACACCAGCCCCACTTGTGAAGTACAGAGAAGAAGAATTGAAGGTTGTAAGAGGCGATGGAACTGGAGAACGAAAGGAATGGGATAGAATTTATGATTACGATGTCTACAATGACTTGGGCAACCCAGATAAAGGTGAAGCCTATGCTCGCCCTGTTCTTGGAGGTTCTACCTTGCCTTACCCTCGTAGAGGAAGAACTGGAAGACCCAAAACTACAAAAGATCCTAACAGTGAGAAGCCCAGCGACTTTGTTTACCTTCCAAGAGACGAAGCGTTTGGTCACTTGAAGTCATCCGATTTTCTCGCTTATGCATTGAAATCGGTATCCCAAGATGTGTTACCAGTCTTGACTGATGCATTCGATGGAAATATTTTGACTCTTGAGTTTGATAGTTTCGCTGAAGTGCACAAGCTTTATGAAGGTGGAGTTACATTGCCCACAAACTTTCTCAGCAAATACGCTCCCATACCAATTGTCAAGGAACTTTTTCGAAGTGATGGTGAACAGTTTCTCAAGTATCCACCTCCTAAAGTCATGCAAGTGGATAAGTCTGCATGGATGACTGATGAAGAATTTGCAAGGGAAACCATTGCCGGTGTGAATCCTAATGTCATTAAGATTCTTAAGGAATTCCCACCACGTAGCACGCTAGACACTCAAACCTTTGGAGACCATACCTCTATAATAACGAAAGAGCATTTAGAGCCTCAATTAGGAGGGCTCACTGTTGAGCAGGCTATCGAGAACAATAAGTTATTCATCTTAGATCACCATGACTATCTCATTCCATATTTGAGGAAAATAAATTCATCTACCACAAAGACTTATGCCACGAGAACCATATTTTTCTTGAAAGAGGATGGAACTCTGACACCATTGGCCATCGAGTTAAGTAAGCCACATGATCAGGGTGACGAATTCGGTCCTATCAGTGAAGTCTATGTGCCTGCATACGAGGGAGTGGAAGCTTACATTTGGTTACTGGCAAAGGCTTATGTTGTTGTGAATGACTCGTGCTACCATCAAATCATTAGCCATTGGCTAAGCACTCATGCAGTTGTTGAGCCTTTCGTCATAGCAACGAACAGGCAATTGAGTGTTGTTCACCCTGTTTATAAGCTCCTGTTTCCTCACTACCGTGATACCATGAACATCAACTCACTGGCCCGTAAGTCCTTGGTCAACGCAGATGGTATCATAGAGAAAACATTCTTGTGGAGTAGGTACTCTTTGGAAATGTCTGCTGTGATTTACAAGGACTGGTCTTTCGTTGATCAAGCACTACCCAATGATCTTGTCAAGAGAGGAGTTGCAGTTAAAGATGCATCTGCTCCCCACGGTGTTAAGCTTTTGATTGAGGATTATCCTTATGCTTCTGATGGGCTGGAGATATGGGCAGCCATCAAGTCATGGGTGGAAGAGTATGTGGCATTCTATTACAAGTCAGATGAGGTACTTCAAAAAGACCCTGAACTCCAAGCTTGGTGGAAAGAACTTGTTCAGGTGGGTCATGGTGATTTGAAAGATAAGCCATGGTGGCCAAAGTTGCAAACACGTGGAGAGTTGGTTGACGTCTCCACTACCCTGATTTGGATATCTTCAGCCCTTCATGCAGCTGTTAACTTCGGACAATATCCATATGGTGGTTTAATCTTGAACAGGCCAACCATTAGCAGAAGATTCATGCCTGAGAAAGGGTCTGCTGAATATGAGGCATTGGGTAAGAATCCTGAGAAGGAGTTTTTGAGAACTATTACTGGTAAGAAAGAGACCCTGATTGACCTTACAGTTATAGAGATATTGTCAAGGCACGCATCTGATGAGTTCTACCTTGGAGAGAGAGATGGTGGTGACTTTTGGACTTCAGATGCAGGGCCATTGGAAGCCTTTAAGAGGTTTGGAAAGAAACTTGCTGAAATTGAACAAAAACTTGTACAGAAAAACAATGATGAGACATTGAGAAACCGCACTGGACCTGCTAAAATGCCTTACACTCTTCTCTTTCCTTCCAGTGAGGAGGGATTGACCTTCAGAGGAATCCCCAACAGTATCTCTATCTAA 2598 0.4342 MAESKEVEKMLGGIFGGNKQKIKGTVVLMRKNVLDINSILNPASVIDNVFDLAGSLVDAVTAFATSISIQLISSTKADGQGKGKVGTATKLRGQISLPTLGASEEAYDVNFEWDSDFGIPGAFYIKNFMQNEFYLKSLTLEDIPNHGTIHFVCNSWVYNDNKYKTPRIFFANNTYLPGETPAPLVKYREEELKVVRGDGTGERKEWDRIYDYDVYNDLGNPDKGEAYARPVLGGSTLPYPRRGRTGRPKTTKDPNSEKPSDFVYLPRDEAFGHLKSSDFLAYALKSVSQDVLPVLTDAFDGNILTLEFDSFAEVHKLYEGGVTLPTNFLSKYAPIPIVKELFRSDGEQFLKYPPPKVMQVDKSAWMTDEEFARETIAGVNPNVIKILKEFPPRSTLDTQTFGDHTSIITKEHLEPQLGGLTVEQAIENNKLFILDHHDYLIPYLRKINSSTTKTYATRTIFFLKEDGTLTPLAIELSKPHDQGDEFGPISEVYVPAYEGVEAYIWLLAKAYVVVNDSCYHQIISHWLSTHAVVEPFVIATNRQLSVVHPVYKLLFPHYRDTMNINSLARKSLVNADGIIEKTFLWSRYSLEMSAVIYKDWSFVDQALPNDLVKRGVAVKDASAPHGVKLLIEDYPYASDGLEIWAAIKSWVEEYVAFYYKSDEVLQKDPELQAWWKELVQVGHGDLKDKPWWPKLQTRGELVDVSTTLIWISSALHAAVNFGQYPYGGLILNRPTISRRFMPEKGSAEYEALGKNPEKEFLRTITGKKETLIDLTVIEILSRHASDEFYLGERDGGDFWTSDAGPLEAFKRFGKKLAEIEQKLVQKNNDETLRNRTGPAKMPYTLLFPSSEEGLTFRGIPNSISI 865
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00360 865 ProSitePatterns Lipoxygenases iron-binding region signature 2. 547 557 IPR020834 GO:0016702|GO:0046872
Vimu4g00360 865 PRINTS Lipoxygenase signature 502 519 IPR013819 GO:0016702|GO:0046872
Vimu4g00360 865 PRINTS Lipoxygenase signature 520 537 IPR013819 GO:0016702|GO:0046872
Vimu4g00360 865 PRINTS Lipoxygenase signature 540 560 IPR013819 GO:0016702|GO:0046872
Vimu4g00360 865 Gene3D PLAT/LH2 domain 14 175 - -
Vimu4g00360 865 ProSiteProfiles PLAT domain profile. 45 171 IPR001024 GO:0005515
Vimu4g00360 865 Pfam PLAT/LH2 domain 75 170 IPR001024 GO:0005515
Vimu4g00360 865 CDD PLAT_LH2 21 172 IPR042057 -
Vimu4g00360 865 FunFam Lipoxygenase 176 274 - -
Vimu4g00360 865 ProSitePatterns Lipoxygenases iron-binding region signature 1. 520 534 IPR020833 GO:0016702|GO:0046872
Vimu4g00360 865 Gene3D - 498 864 - -
Vimu4g00360 865 Gene3D - 275 363 IPR027433 -
Vimu4g00360 865 Pfam Lipoxygenase 184 848 IPR013819 GO:0016702|GO:0046872
Vimu4g00360 865 FunFam Lipoxygenase 364 497 - -
Vimu4g00360 865 Gene3D - 176 274 - -
Vimu4g00360 865 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 174 865 IPR013819 GO:0016702|GO:0046872
Vimu4g00360 865 SMART LH2_4 20 172 IPR001024 GO:0005515
Vimu4g00360 865 SUPERFAMILY Lipoxigenase 177 865 IPR036226 -
Vimu4g00360 865 Gene3D - 364 497 - -
Vimu4g00360 865 PRINTS Plant lipoxygenase signature 141 159 IPR001246 GO:0016491
Vimu4g00360 865 PRINTS Plant lipoxygenase signature 777 791 IPR001246 GO:0016491
Vimu4g00360 865 PRINTS Plant lipoxygenase signature 206 222 IPR001246 GO:0016491
Vimu4g00360 865 PRINTS Plant lipoxygenase signature 238 257 IPR001246 GO:0016491
Vimu4g00360 865 PRINTS Plant lipoxygenase signature 305 326 IPR001246 GO:0016491
Vimu4g00360 865 PRINTS Plant lipoxygenase signature 167 188 IPR001246 GO:0016491
Vimu4g00360 865 PRINTS Plant lipoxygenase signature 455 479 IPR001246 GO:0016491
Vimu4g00360 865 PRINTS Plant lipoxygenase signature 350 366 IPR001246 GO:0016491
Vimu4g00360 865 PRINTS Plant lipoxygenase signature 389 408 IPR001246 GO:0016491
Vimu4g00360 865 MobiDBLite consensus disorder prediction 229 261 - -
Vimu4g00360 865 FunFam Lipoxygenase 499 864 - -
Vimu4g00360 865 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 20 175 IPR036392 GO:0005515
Vimu4g00360 865 PANTHER LIPOXYGENASE 19 865 IPR000907 GO:0016702|GO:0034440|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00360 Vimu-Chr4 2577211 2581342 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu4g00360 6 865 Acyl Lipid Metabolism Gene Families AT1G55020 56.899 0.0 1001
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00360 K15718 - gmx:547860 1525.76
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00360 4 2577211 2581342 Vimu11g02998 11 49567865 49571996 PCT
Vimu11g02999 11 49592420 49596767 Vimu4g00360 4 2577211 2581342 PCT