Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g02998 ATGTTTTCAGGTGTGACAGGTCTCATCAACCGGGGGCAGAAGCTGAAGGGAACAGTGGTGTTGATGCGTAAGAATGTGTTGGACATCAATGCTCTCACTTCTGCTCAAAGTCCCACCGGCATCATCGGTGGCGCAATCGGTGTTGTGGGTGGTGTCATCGGCACCACCGTTGACACTCTCACTTCCTTTCTCGGACGATCTGTGGCTCTCAGGTTGATCAGTGCCACCGCTGCTGATGCATCTGGAAAAGGAAAGGTGGGAAAACAAACATATTTGGAAGGTATTATTACTTCCTTACCAACCTTGGGAGCTGGCCAGTCTGCATTCGATATTCATTTTGAATGGGACAGTGACATGGGAATTCCTGGAGCATTTTACATTGAGAATTTCATGCAAGTTGAATTCTTCCTTGTGAGTTTGACTCTTGAAGATATTCCTAACCACGGAACCATACACTTTGTTTGCAACTCATGGGTTTACAACGACAAAAAGTACAAATCTGATCGCATTTTCTTTGCCAACAAGGCATACCTTCCAAGTGAAACACCAGGTCCACTGGTGAAGTATAGAGAAGAAGAGTTAAAGACTTTGAGAGGAGATGGAACAGGAGAGCGCAAGGAACATGAAAGAATCTATGACTATGATGTCTACAATGATTTGGGCGATCCTGACTCCAATGCCAGATTGGCCCGTCCAGTTCTTGGAGGATCCACGTTGCCTTATCCTCGCAGGGGAAGAACTGGAAGAAAACCAACTAAGAAAGATCCTAAAAGTGAGAGTCGCAGTGACTCTGTATATCTTCCAAGGGATGAATCATTTGGTCACTTGAAATCATCAGATTTCCTTGTTTATATTCTTAAATCTGCATCTCAAAATGTGATACCTCAATTACAATCTGCACTTAGACTACAATTCAACCAACCTGAGTTTACTAGCTTTGATGATGTGCGTGGACTCTATGATGGTGGAATTAAGTTGCCTACTGATGCACTTAGCAAGATTAGTCCTATACCATTGTTCAGTGAACTATTTCGTACTGATGGAGAACAGGTTCTCAAGTTTCCACCACCTAAAGTAATTCAAGTGGACCAGTCTGCATGGATGACCGATGAAGAGTTTGCAAGAGAGATGATTGCTGGTGTGAATCCTCATATCATTACAAGACTTCAGGAGTTTCCACCAAAGAGCAAGCTAGATAGCCAGCTCTATGGTGATAATACCAGTACAATTACAAGAGAACACTTGGAGCCTAACTTGGGTGGGCTCACTGTAGAACAGGCCATCCAAAACAACAGACTCTTCATACTAAATCACCATGACACACTTATTCCATATTTGAGACGAATCAATGCAACAGAGACAAAGGCCTATGCTACTAGGACCATCATTTTCTTACAAGATAATGGAACACTAAAGCCATTGGCTATTGAGTTAAGCAAACCACATCCCCAGGGTGATAATTTTGGTCCTATTAGCAATGTTTATCTTCCGGCAAACCAAGGAGTTGAAGCTTATATTTGGCTACTTGCAAAGGCTTATGTGATCGTAAATGACTCTTGTTATCATCAACTTGTCAGCCATTGGTTAAACACTCATGCAGTTGTTGAGCCATTCGTGATAGCAACTAACAGGCATCTCAGTGTGGTTCACCCTATTCACAAACTTCTTCTTCCACATTATCGTGACACAATGAACATCAATGCACTTGCAAGGAATGTCTTGGTCAATGCAGAGGGTATCATAGAATCAACTTTCTTGTGGGGAAGCTATTCGTTAGAAATGTCTGCAGTTGTATACAAGGATTGGGTTTTCCCTGAGCAAGCACTACCTGCAGATCTTCTTAAGAGAGGTGTGGCTGTTAAGGATTCATCTTCTCCACACGGCCTTCGTCTTCTGATAGAGGACTATCCTTATGCTGCTGATGGACTAGAGATATGGGCCACCATCAAGTCATGGGTGCAAGAATATGTGTCTTTCTACTACAAGTCTGATGCTGCAATTACACAAGATACTGAACTCCAAGCCTTTTGGAAAGAACTTGTGCAAGTTGGTCATGGTGACAAGAAAAATGAGACATGGTGGGTGAAAATGCAAACTCGTGAAGAGTTGATTGAATCTTGCACCACACTAATATGGACTGCTTCAGCCCTTCATGCAGCTGTAAATTTCGGACAGTATCCATATGGTGGCTACATCCTTAACCGACCAACTCTTAGTAGGCAATTCATGCCTGAGATTGGATCTGCTGAGTATGCTGAGCTTGCCAAGAACCCTGAAAAGGTGTACTTGAAAACAATCACAGGGAAGAGTGATGCCCTTAAAGACCTCACCATAATAGAGGTGTTGTCAAGGCATGCTTCTGATGAGTTGTATCTCGGAGAAAGAGATGGTGGTGATGTTTGGACTTATGATAAGGAGCCATTGGAGGCCTTCAAGAGGTTTGGAAAGAGGTTGGCAGAAATTGAGCAAAAGCTCATCCAAAGAAATAGTGATGAGACTCTGAGGAACCGATATGGTCCAGTGAAGATGCCTTACACATTGCTCTATCCTTCAAGTGAGGAAGGCTTGACTTTCAGAGGTATTCCTAACAGCATCTCCATCTAA 2604 0.4305 MFSGVTGLINRGQKLKGTVVLMRKNVLDINALTSAQSPTGIIGGAIGVVGGVIGTTVDTLTSFLGRSVALRLISATAADASGKGKVGKQTYLEGIITSLPTLGAGQSAFDIHFEWDSDMGIPGAFYIENFMQVEFFLVSLTLEDIPNHGTIHFVCNSWVYNDKKYKSDRIFFANKAYLPSETPGPLVKYREEELKTLRGDGTGERKEHERIYDYDVYNDLGDPDSNARLARPVLGGSTLPYPRRGRTGRKPTKKDPKSESRSDSVYLPRDESFGHLKSSDFLVYILKSASQNVIPQLQSALRLQFNQPEFTSFDDVRGLYDGGIKLPTDALSKISPIPLFSELFRTDGEQVLKFPPPKVIQVDQSAWMTDEEFAREMIAGVNPHIITRLQEFPPKSKLDSQLYGDNTSTITREHLEPNLGGLTVEQAIQNNRLFILNHHDTLIPYLRRINATETKAYATRTIIFLQDNGTLKPLAIELSKPHPQGDNFGPISNVYLPANQGVEAYIWLLAKAYVIVNDSCYHQLVSHWLNTHAVVEPFVIATNRHLSVVHPIHKLLLPHYRDTMNINALARNVLVNAEGIIESTFLWGSYSLEMSAVVYKDWVFPEQALPADLLKRGVAVKDSSSPHGLRLLIEDYPYAADGLEIWATIKSWVQEYVSFYYKSDAAITQDTELQAFWKELVQVGHGDKKNETWWVKMQTREELIESCTTLIWTASALHAAVNFGQYPYGGYILNRPTLSRQFMPEIGSAEYAELAKNPEKVYLKTITGKSDALKDLTIIEVLSRHASDELYLGERDGGDVWTYDKEPLEAFKRFGKRLAEIEQKLIQRNSDETLRNRYGPVKMPYTLLYPSSEEGLTFRGIPNSISI 867
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g02998 867 MobiDBLite consensus disorder prediction 227 266 - -
Vimu11g02998 867 Gene3D - 178 276 - -
Vimu11g02998 867 Gene3D - 277 365 IPR027433 -
Vimu11g02998 867 ProSitePatterns Lipoxygenases iron-binding region signature 1. 522 536 IPR020833 GO:0016702|GO:0046872
Vimu11g02998 867 ProSiteProfiles PLAT domain profile. 48 173 IPR001024 GO:0005515
Vimu11g02998 867 FunFam Lipoxygenase 366 499 - -
Vimu11g02998 867 Gene3D PLAT/LH2 domain 4 177 - -
Vimu11g02998 867 Pfam PLAT/LH2 domain 79 172 IPR001024 GO:0005515
Vimu11g02998 867 Gene3D - 366 499 - -
Vimu11g02998 867 FunFam Lipoxygenase 178 276 - -
Vimu11g02998 867 SMART LH2_4 13 174 IPR001024 GO:0005515
Vimu11g02998 867 Pfam Lipoxygenase 186 850 IPR013819 GO:0016702|GO:0046872
Vimu11g02998 867 Gene3D - 500 866 - -
Vimu11g02998 867 PRINTS Lipoxygenase signature 542 562 IPR013819 GO:0016702|GO:0046872
Vimu11g02998 867 PRINTS Lipoxygenase signature 504 521 IPR013819 GO:0016702|GO:0046872
Vimu11g02998 867 PRINTS Lipoxygenase signature 522 539 IPR013819 GO:0016702|GO:0046872
Vimu11g02998 867 ProSiteProfiles Lipoxygenase iron-binding catalytic domain profile. 176 867 IPR013819 GO:0016702|GO:0046872
Vimu11g02998 867 MobiDBLite consensus disorder prediction 252 266 - -
Vimu11g02998 867 FunFam Lipoxygenase 501 866 - -
Vimu11g02998 867 SUPERFAMILY Lipoxigenase 178 867 IPR036226 -
Vimu11g02998 867 PRINTS Plant lipoxygenase signature 240 259 IPR001246 GO:0016491
Vimu11g02998 867 PRINTS Plant lipoxygenase signature 307 328 IPR001246 GO:0016491
Vimu11g02998 867 PRINTS Plant lipoxygenase signature 391 410 IPR001246 GO:0016491
Vimu11g02998 867 PRINTS Plant lipoxygenase signature 779 793 IPR001246 GO:0016491
Vimu11g02998 867 PRINTS Plant lipoxygenase signature 352 368 IPR001246 GO:0016491
Vimu11g02998 867 PRINTS Plant lipoxygenase signature 169 190 IPR001246 GO:0016491
Vimu11g02998 867 PRINTS Plant lipoxygenase signature 208 224 IPR001246 GO:0016491
Vimu11g02998 867 PRINTS Plant lipoxygenase signature 457 481 IPR001246 GO:0016491
Vimu11g02998 867 PRINTS Plant lipoxygenase signature 143 161 IPR001246 GO:0016491
Vimu11g02998 867 ProSitePatterns Lipoxygenases iron-binding region signature 2. 549 559 IPR020834 GO:0016702|GO:0046872
Vimu11g02998 867 SUPERFAMILY Lipase/lipooxygenase domain (PLAT/LH2 domain) 13 177 IPR036392 GO:0005515
Vimu11g02998 867 CDD PLAT_LH2 14 174 IPR042057 -
Vimu11g02998 867 PANTHER LIPOXYGENASE 12 867 IPR000907 GO:0016702|GO:0034440|GO:0046872
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g02998 Vimu-Chr11 49567865 49571996 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vimu11g02998 1 867 Acyl Lipid Metabolism Gene Families AT1G55020 56.933 0.0 1026
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g02998 K15718 - gmx:100816880 1560.81
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu4g00360 4 2577211 2581342 Vimu11g02998 11 49567865 49571996 PCT