Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu4g00305 ATGGTAACACTCGGGGAGAACTTACGACACTCGGAAGACGAGATTCCCGCGGTAGCCATCATCCACCCTACTCAAGCGGCTTCAAAATTAGAAACTGATTTTTGCTCAGGGGTACAATTAATTAGGGTTGTGAGGGCGCTGTCGAGGCTGTTGGCGGAGGCGGAGCTGGGAACGGCAACGGTGGAGAAGGTTCTGAAGCTGGTGGAGGCGGCGTCTTCGACGAAGGAAGCTGAGCAGTTGGAGACACCCAATAAGAATCTGATTCTTGAGAAAGGAGATTTCTTCTTCTGGGAGATTGCCATTTTTGTCTTTCACACTGACTTTGTTACTACAATGGCTGAAATTGTAGTGGTTTTCGACTTTGACAAGACCATTGTAGACTGTGACAGTGATAACTGGGTTGTTGATGAGTTGGGTTTCAGTGTTCTGTTCAATCGTCTTCTTCCTACCATGCCTTGGAACACTCTCATGGATAAGATGATGATGGAGCTTCATTCCCATGGAAAAACCATTGATGACATTGTGCAAGTTCTTCAGAGGATTCCTATACACCCCAGAATAATCCCTGCCATTAAAGCAGTTCATGCTTTAGGGTGTGATTTGAGGATTGTGAGTGATGCAAACACGTTCTTCATCGAGACAATTTTAGAACACTTAAAAATAAGGGAATGCTTCTCAGATATAAGCTCTAATCCAAGTTATATTAACGAATATGGAAGGCTGCAAATTTTCCCTTACCATGACTTCAACAAGTTTTCCCATGGATGCACTTTATGCCCTCCCAACATGTGCAAGGGGAAAATCATAGAGAAAATCCAAGAATCATTAGGAGAAAAGAAGAGATTGATCTATCTTGGGGATGGTAGTGGAGACTATTGTCCAAGCTTGAGGCTGAAAGAACAAGACTTTGTGATGCCAAGAAAGAATTTTCCAGTGTGGGAACTGATATGCAAAGACCCTTTGCTCATTAAAGCTGAAATTCATGAATGGAGCAATGGAGAAGAGCTTGAACGAGTTTCTTTGAGGCTAATCAACAAAATTTGTTCTGGACAAAGTGCTCAGTTCATTTCATCCAATTGCAAACTGCATGTTATGTGCGTGTTTGGTTCTGATTAG 1116 0.4274 MVTLGENLRHSEDEIPAVAIIHPTQAASKLETDFCSGVQLIRVVRALSRLLAEAELGTATVEKVLKLVEAASSTKEAEQLETPNKNLILEKGDFFFWEIAIFVFHTDFVTTMAEIVVVFDFDKTIVDCDSDNWVVDELGFSVLFNRLLPTMPWNTLMDKMMMELHSHGKTIDDIVQVLQRIPIHPRIIPAIKAVHALGCDLRIVSDANTFFIETILEHLKIRECFSDISSNPSYINEYGRLQIFPYHDFNKFSHGCTLCPPNMCKGKIIEKIQESLGEKKRLIYLGDGSGDYCPSLRLKEQDFVMPRKNFPVWELICKDPLLIKAEIHEWSNGEELERVSLRLINKICSGQSAQFISSNCKLHVMCVFGSD 371
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu4g00305 371 SUPERFAMILY HAD-like 111 299 IPR036412 -
Vimu4g00305 371 PANTHER PHOSPHATASE, ORPHAN 1, 2 112 349 IPR016965 GO:0016791
Vimu4g00305 371 NCBIfam MtnX-like HAD-IB family phosphatase 115 308 IPR006384 GO:0016791
Vimu4g00305 371 Gene3D - 54 298 IPR023214 -
Vimu4g00305 371 Pfam Putative Phosphatase 115 343 IPR016965 GO:0016791
Vimu4g00305 371 NCBIfam HAD-IB family phosphatase 116 296 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu4g00305 Vimu-Chr4 2263004 2267916 Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu4g00305 K13248 - gmx:100801052 442.195
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04601 11 66689644 66690778 Vimu4g00305 4 2263004 2267916 ECH
Vimu4g00305 4 2263004 2267916 Vimu4g00305 4 2263004 2267916 ECH
Vimu11g02934 11 49110435 49111355 Vimu4g00305 4 2263004 2267916 PCT