Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vimu11g04601 ATGGGCGGAAGCGTGGCGGCGACGGTGGTTTTCGACTTCGATCGAACCATAATCGACGATGACAGTGACAGATGGATCATCACTGAGTTGGGTCTCACTCACCTATTCAACCAACTCAGGCAAACCATGCCTTGGACCTCTCTCATGGATAGGATCATGGAGGAGCTCCACTCGAACGGAATCACTGTCGATCATATTGCAGAGTGCCTTAAAAGAACCCCCTTGCATCCCAACATTGTTTCAGCCATCAAATCTGCACACGCTCTTGGGTGTGACTTGAGGATAATCAGTGACGCAAATATGTTCTCCATTAGGACCATTCTGGAACACCATGGTTTATTAGGTTGCTTTTCACAGATTAATACAAACCCTGGTTTTGTAGATAATGAAGGACGTCTTCGTGTCACTCCCTTTCATGATTCAGCCTTGTCTCCTCATGCTTGTTCCCTCTGCCCTCCCAATATGTGCAAGGGTTTAGTGACAGCCCAAATTCGAGGTTCTTTTCCTGGAAATGAAAGAAAAATCATCTACCTTGGAGATGGAACAGGTGATTATTGCCCAACTTTGAGGCTGAAGGGAGGTGATTTTGTGATGCCAAGGAAAAATTATCCTCTCTGGAACCAGATTCAAAGTGACCCAAAATTAGTTGTTGCAGAAGTTCATGATTGGAGCAATGGGGAGGAGTTGGAGAGCATTCTACTCAACCTTATCAACAAAATAACCCCCACTAGTTGCTAG 738 0.4539 MGGSVAATVVFDFDRTIIDDDSDRWIITELGLTHLFNQLRQTMPWTSLMDRIMEELHSNGITVDHIAECLKRTPLHPNIVSAIKSAHALGCDLRIISDANMFSIRTILEHHGLLGCFSQINTNPGFVDNEGRLRVTPFHDSALSPHACSLCPPNMCKGLVTAQIRGSFPGNERKIIYLGDGTGDYCPTLRLKGGDFVMPRKNYPLWNQIQSDPKLVVAEVHDWSNGEELESILLNLINKITPTSC 245
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vimu11g04601 245 PANTHER PHOSPHATASE, ORPHAN 1, 2 8 241 IPR016965 GO:0016791
Vimu11g04601 245 NCBIfam HAD-IB family phosphatase 9 190 - -
Vimu11g04601 245 SUPERFAMILY HAD-like 8 187 IPR036412 -
Vimu11g04601 245 NCBIfam MtnX-like HAD-IB family phosphatase 8 201 IPR006384 GO:0016791
Vimu11g04601 245 Pfam Putative Phosphatase 9 237 IPR016965 GO:0016791
Vimu11g04601 245 Gene3D - 4 192 IPR023214 -
Vimu11g04601 245 PIRSF PLP_phosphatas_PHOSPHO2 3 241 IPR016965 GO:0016791
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vimu11g04601 Vimu-Chr11 66689644 66690778 Dispersed/Wgd
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vimu11g04601 K13248 - gmx:100306472 371.318
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Vimu11g04601 11 66689644 66690778 Vimu4g00305 4 2263004 2267916 ECH
Vimu11g04601 11 66689644 66690778 Vimu11g04601 11 66689644 66690778 ECH